FC923644
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 8.471e-37 Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 1 Query: 298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471 V + WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI Sbjct: 44 VSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101 HSP 2 Score: 76.6406 bits (187), Expect = 8.471e-37 Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 2 Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712 VIH RWAMLGALGC+ PE+L + V F E WFKAG+QIFS+GGLDYLGNP Sbjct: 100 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAGWFKAGSQIFSDGGLDYLGNP 150
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.193e-35 Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1 Query: 316 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471 +YGPDR K+LGPFS TP YLTGEFPGDYGWDTAGLSADP+ FAR R +E+I Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELI 85 HSP 2 Score: 82.4185 bits (202), Expect = 1.193e-35 Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 2 Query: 542 YFNL*VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGN 709 Y + +IH RWA+LGALG +TPE+L ++ V F EPVWFKAGAQIF++GGL+YLGN Sbjct: 79 YREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGN 134
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 4.473e-35 Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 Query: 316 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471 +YGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+I Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELI 88 HSP 2 Score: 83.5741 bits (205), Expect = 4.473e-35 Identity = 42/57 (73.68%), Postives = 44/57 (77.19%), Query Frame = 2 Query: 542 YFNL*VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712 Y L +IH RWAMLGALGC TPE+L K F E VWFKAGAQIFSEGGLDYLGNP Sbjct: 82 YRELELIHARWAMLGALGCQTPELLAK-SGTKFGEAVWFKAGAQIFSEGGLDYLGNP 137
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.305e-32 Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 1 Query: 316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471 WYG DRV YLGP S PSYLTGEFPGDYGWDT GLSADPE FA+NR LEVI Sbjct: 48 WYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVI 99 HSP 2 Score: 64.6994 bits (156), Expect = 3.305e-32 Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 2 Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712 VIH RWA+ LGC+ PE+L + V F E VWFKAG+QIFSEGGL + GNP Sbjct: 98 VIHCRWAIAVGLGCVFPELLAR-NGVKFGEGVWFKAGSQIFSEGGLSHPGNP 148
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.328e-32 Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 Query: 349 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471 PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 41 HSP 2 Score: 79.7221 bits (195), Expect = 4.328e-32 Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 2 Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712 VIH WAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP Sbjct: 40 VIHSTWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 90
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.239e-31 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712 VIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP Sbjct: 90 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 140 HSP 2 Score: 76.2554 bits (186), Expect = 1.239e-31 Identity = 38/58 (65.52%), Postives = 40/58 (68.97%), Query Frame = 1 Query: 298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471 V WYGPDRVKYLGPFS + PSYLTGEF GLSADPE FA+NR LEVI Sbjct: 42 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF--------HGLSADPETFAKNRELEVI 91
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 3.041e-22 Identity = 32/52 (61.54%), Postives = 34/52 (65.38%), Query Frame = 1 Query: 316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471 +YGPD Q P TGEFPGDYGWDTAGLSADPE F R R LE+I Sbjct: 57 FYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELI 107 HSP 2 Score: 62.7734 bits (151), Expect = 3.041e-22 Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 2 Query: 542 YFNL*VIHGRWAMLGALGCITPEVLEKWLRVDFKEP-VWFKAGAQIFSEGGLDYLGNP 712 Y L +IH R +LGALG +TPE+L + F + +WFKAGA IF +GGL+YLGNP Sbjct: 101 YRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNP 158
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17 Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 331 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIFFPSYSCPLSAGNVVTATKILILLFQFVGD 561 RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSA PE FA+NR LEVI C +SA ++L ++ Q G+ Sbjct: 58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVI---HSRCAMSAALGCIFPELLSVMGQGFGE 131 HSP 2 Score: 72.0182 bits (175), Expect = 3.500e-12 Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 2 Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712 VIH R AM ALGCI PE+L + F E VWFKAGAQIFSEGGLDYLGNP Sbjct: 103 VIHSRCAMSAALGCIFPELLSV-MGQGFGEAVWFKAGAQIFSEGGLDYLGNP 153
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 2.126e-15 Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 1 Query: 316 WYGPDRVKYLGPF---SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471 WYGPDR +L ++ P YL GE GDYG+D GL PE FA+ +A E+I Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELI 116 HSP 2 Score: 50.8322 bits (120), Expect = 2.126e-15 Identity = 25/50 (50.00%), Postives = 29/50 (58.00%), Query Frame = 2 Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLG 706 +IH RWAMLGA G I PE L K+ E VWFK GA + L+Y G Sbjct: 115 LIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164 The following BLAST results are available for this feature:
BLAST of FC923644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923644 ID=FC923644; Name=FC923644; organism=Citrus clementina; type=EST; length=714bpback to top |