FC923644

Overview
NameFC923644
Unique NameFC923644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.471e-37
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 1
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V  +  WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   44 VSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101          

HSP 2 Score: 76.6406 bits (187), Expect = 8.471e-37
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E  WFKAG+QIFS+GGLDYLGNP
Sbjct:  100 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAGWFKAGSQIFSDGGLDYLGNP 150          
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.193e-35
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1
Query:  316 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            +YGPDR K+LGPFS   TP YLTGEFPGDYGWDTAGLSADP+ FAR R +E+I
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELI 85          

HSP 2 Score: 82.4185 bits (202), Expect = 1.193e-35
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  542 YFNL*VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGN 709
            Y  + +IH RWA+LGALG +TPE+L ++  V F EPVWFKAGAQIF++GGL+YLGN
Sbjct:   79 YREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGN 134          
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.473e-35
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1
Query:  316 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            +YGP+R K+LGP+S   TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+I
Sbjct:   36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELI 88          

HSP 2 Score: 83.5741 bits (205), Expect = 4.473e-35
Identity = 42/57 (73.68%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  542 YFNL*VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            Y  L +IH RWAMLGALGC TPE+L K     F E VWFKAGAQIFSEGGLDYLGNP
Sbjct:   82 YRELELIHARWAMLGALGCQTPELLAK-SGTKFGEAVWFKAGAQIFSEGGLDYLGNP 137          
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.305e-32
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 1
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYG DRV YLGP S   PSYLTGEFPGDYGWDT GLSADPE FA+NR LEVI
Sbjct:   48 WYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVI 99          

HSP 2 Score: 64.6994 bits (156), Expect = 3.305e-32
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 2
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWA+   LGC+ PE+L +   V F E VWFKAG+QIFSEGGL + GNP
Sbjct:   98 VIHCRWAIAVGLGCVFPELLAR-NGVKFGEGVWFKAGSQIFSEGGLSHPGNP 148          
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.328e-32
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  349 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 41          

HSP 2 Score: 79.7221 bits (195), Expect = 4.328e-32
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH  WAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   40 VIHSTWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 90          
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.239e-31
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   90 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 140          

HSP 2 Score: 76.2554 bits (186), Expect = 1.239e-31
Identity = 38/58 (65.52%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V     WYGPDRVKYLGPFS + PSYLTGEF         GLSADPE FA+NR LEVI
Sbjct:   42 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF--------HGLSADPETFAKNRELEVI 91          
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.041e-22
Identity = 32/52 (61.54%), Postives = 34/52 (65.38%), Query Frame = 1
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            +YGPD          Q P   TGEFPGDYGWDTAGLSADPE F R R LE+I
Sbjct:   57 FYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELI 107          

HSP 2 Score: 62.7734 bits (151), Expect = 3.041e-22
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 2
Query:  542 YFNL*VIHGRWAMLGALGCITPEVLEKWLRVDFKEP-VWFKAGAQIFSEGGLDYLGNP 712
            Y  L +IH R  +LGALG +TPE+L     + F +  +WFKAGA IF +GGL+YLGNP
Sbjct:  101 YRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNP 158          
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  331 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIFFPSYSCPLSAGNVVTATKILILLFQFVGD 561
            RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSA PE FA+NR LEVI      C +SA       ++L ++ Q  G+
Sbjct:   58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVI---HSRCAMSAALGCIFPELLSVMGQGFGE 131          

HSP 2 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 2
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH R AM  ALGCI PE+L   +   F E VWFKAGAQIFSEGGLDYLGNP
Sbjct:  103 VIHSRCAMSAALGCIFPELLSV-MGQGFGEAVWFKAGAQIFSEGGLDYLGNP 153          
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.126e-15
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 1
Query:  316 WYGPDRVKYLGPF---SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDR  +L       ++ P YL GE  GDYG+D  GL   PE FA+ +A E+I
Sbjct:   62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELI 116          

HSP 2 Score: 50.8322 bits (120), Expect = 2.126e-15
Identity = 25/50 (50.00%), Postives = 29/50 (58.00%), Query Frame = 2
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLG 706
            +IH RWAMLGA G I PE L K+      E VWFK GA +     L+Y G
Sbjct:  115 LIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164          
The following BLAST results are available for this feature:
BLAST of FC923644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB21_WHEAT8.471e-3775.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_DUNTE1.193e-3575.47Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE4.473e-3573.58Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE3.305e-3280.77Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_CUCSA4.328e-3285.37Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_SOYBN1.239e-3175.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_DUNSA3.041e-2261.54Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.789e-1759.74Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH2.126e-1547.27Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC31707D09EF StrClemenN Citrus clementina cDNA clone C31707D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923644 ID=FC923644; Name=FC923644; organism=Citrus clementina; type=EST; length=714bp
GATTGTCTTCAGACACATATTAACATCACAGTTCCAACCGACACAACATC
CATAATACCAACTCTCAGGACAATGGCATCAATAATGGCGGCTGCTACTG
CTAGCTCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGG
ACAACTGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTA
CACAATGGTAATAAGTTGGTAACCTTAACCTACACCTTCAGCCTTTTTGT
CTCTCTTTGTCTCTGTGTTTAGGGAAATTCATTGAAGATATTGTTGTGTT
CAGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACC
CTTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACT
ATGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGG
AACAGGGCTCTTGAGGTGATATTCTTTCCTTCTTATTCTTGCCCTCTGTC
GGCTGGTAATGTGGTTACAGCAACAAAGATATTGATACTACTATTTCAAT
TTGTAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCAT
CACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGG
TTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTAC
TTGGGAAACCCCAC
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