FC923645

Overview
NameFC923645
Unique NameFC923645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: CP11A_HUMAN (Cholesterol side-chain cleavage enzyme, mitochondrial OS=Homo sapiens GN=CYP11A1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 48/142 (33.80%), Postives = 76/142 (53.52%), Query Frame = 2
Query:    2 YEMMKNPRVMKKAQAEVREVFNRKGKVDETGINEMKYLKLVVKETLRLHPSAPLILRECGDSCEINGFNIPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAML 427
            YEM +N +V    +AEV    ++      T +  +  LK  +KETLRLHP +  + R   +   +  + IPAK  V V  +A GR+P ++ +PE+F P R++  S D   T F  + FG G R C G    +A +E+T+ ++
Sbjct:  340 YEMARNLKVQDMLRAEVLAARHQAQGDMATMLQLVPLLKASIKETLRLHPISVTLQRYLVNDLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFDPTRWL--SKDKNITYFRNLGFGWGVRQCLGRR--IAELEMTIFLI 477          
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: C5084_DICDI (Probable cytochrome P450 508A4 OS=Dictyostelium discoideum GN=cyp508a4 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 56/184 (30.43%), Postives = 88/184 (47.83%), Query Frame = 2
Query:    8 MMKN-PRVMKKAQAEVREVFNRKGKVDETGINE---MKYLKLVVKETLRLHPSAPL-ILRECGDSCEING-FNIPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFE--------YIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPNGMKHEDLDMTEAFGATVRRK 517
            MM N P +  K   EV+    + GK D+  +N+   + Y+  V+KETLR  P  P  + R C +   I+  + IP  A+VI+N  +   +  Y+     F P RF+  +     +N E        +IPF  G R C GM F    + L  A ++ +F  K  +G K   +D T ++G T++ K
Sbjct:  310 MMANYPEIQDKVHQEVKSYLKQIGK-DKVELNDRQSLPYVVAVIKETLRFKPVTPFGVPRSCVNEITIDEKYFIPKGAQVIINYPSIFENEKYFKNANQFDPSRFLQTTTTNTASNEESSFNSNLAFIPFSIGPRNCVGMQFAQDELFLAFANIVLNFTIKSVDGKK---IDETISYGVTLKPK 489          
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: CP2J2_HUMAN (Cytochrome P450 2J2 OS=Homo sapiens GN=CYP2J2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 46/175 (26.29%), Postives = 77/175 (44.00%), Query Frame = 2
Query:   20 PRVMKKAQAEVREVFNRKGKVDETGINEMKYLKLVVKETLRLHPSAPL-ILRECGDSCEINGFNIPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPNGMKHEDLDMTEAFGATVRR-KQDLCMIP 538
            P + +K QAE+  V  +  +        M Y   V+ E  R+    PL + RE      + G+++P    ++ N  A  RDP  W  P++F P+ F+++    K   F  +PF  G+R C G       + +    L+  F ++ PN   +E L +    G T+      LC +P
Sbjct:  331 PEIQEKVQAEIDRVIGQGQQPSTAARESMPYTNAVIHEVQRMGNIIPLNVPREVTVDTTLAGYHLPKGTMILTNLTALHRDPTEWATPDTFNPDHFLENGQFKKREAF--MPFSIGKRACLGEQLARTELFIFFTSLMQKFTFRPPN---NEKLSLKFRMGITISPVSHRLCAVP 500          
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: CP26A_CHICK (Cytochrome P450 26A1 OS=Gallus gallus GN=CYP26A1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 42/132 (31.82%), Postives = 68/132 (51.52%), Query Frame = 2
Query:   65 NRKGKVDETGINEMKYLKLVVKETLRLHPSAPLILRECGDSCEINGFNIPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPNG 460
            N++ +++   + ++KY   V+KETLRL P  P   R    + E+NG+ IP    VI +   T      +T+ + F P+RF+  S +   + F +IPFG G R C G  F    +++    L    +W+L NG
Sbjct:  335 NQEKQLNMEFLEQLKYTGCVIKETLRLSPPVPGGFRIALKTLELNGYQIPKGWNVIYSICDTHDVADLFTDKDEFNPDRFMSPSPE-DSSRFSFIPFGGGLRSCVGKEFAKVLLKIFTVELARSCDWQLLNG 465          
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: CP120_SYNY3 (Putative cytochrome P450 120 OS=Synechocystis sp. (strain PCC 6803) GN=cyp120 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 42/126 (33.33%), Postives = 56/126 (44.44%), Query Frame = 2
Query:   95 INEMKYLKLVVKETLRLHPSAPLILRECGDSCEINGFNIPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPNGMKHE 472
            + +M YL  V++E LRL P      RE    C+  GF+ P    V      T  DP  + +PE F PERF           F ++PFG G R C G  F    ++L    L+  F+W L  G   E
Sbjct:  298 LKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQFQGFHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLGKEFARLEMKLFATRLIQQFDWTLLPGQNLE 423          
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: CP4B1_RAT (Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 42/151 (27.81%), Postives = 74/151 (49.01%), Query Frame = 2
Query:    2 YEMMKNPRVMKKAQAEVREVFNRKGKVDETGINEMKYLKLVVKETLRLHPSAPLILRECGDSCE-INGFNIPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKL 451
            Y M   P   +  + EVR +   +       + +M YL + +KE  RL+P  P + R+       ++G ++PA + + ++ +A  R+   W +PE F P RF   +   +   F ++PF AG R C G  F +  +++  A+ L  FE+ L
Sbjct:  329 YCMALYPEHQQLCREEVRGILGDQDSFQWDDLAKMTYLTMCMKECFRLYPPVPQVYRQLNKPVTFVDGRSLPAGSLISLHIYALHRNSTVWPDPEVFDPLRFSPENAAGRHP-FAFMPFSAGPRNCIGQQFAMNEMKVVTALCLLRFEFSL 478          
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: CP2R1_HUMAN (Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 45/147 (30.61%), Postives = 63/147 (42.86%), Query Frame = 2
Query:   20 PRVMKKAQAEVREVFNRKGKVDETGINEMKYLKLVVKETLRLHPSAPL-ILRECGDSCEINGFNIPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPN 457
            P +  + Q E+  +    GK       +M Y + V+ E LR     PL I     +   + G++IP    VI N ++   D  YW +PE F PERF+D S  Y       +PF  GRR C G       + L    LL  F    P+
Sbjct:  330 PNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSS-GYFAKKEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPH 475          
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: CP27A_RABIT (Sterol 26-hydroxylase, mitochondrial OS=Oryctolagus cuniculus GN=CYP27A1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 48/154 (31.17%), Postives = 68/154 (44.16%), Query Frame = 2
Query:    2 YEMMKNPRVMKKAQAEVREVFNRKGKVDETGINEMKYLKLVVKETLRLHPSAPLILRECGDS-CEINGFNIPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTN---FEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKL 451
            Y + KNP +    + EV  V              M  LK V+KETLRL+P  P   R   D   E+ GF  P   + +   + T RDP  ++EP++F P R++             F  +PFG G R C G       ++L LA L+  +E  L
Sbjct:  352 YHLSKNPEIQAALRKEVVGVVAAGQVPQHKDFAHMPLLKAVLKETLRLYPVIPANSRIIVDKEIEVGGFLFPKNTQFVFCHYVTSRDPSTFSEPDTFWPYRWLRKGQPETSKTQHPFGSVPFGYGVRACLGRRIAELEMQLLLARLIQRYELML 505          
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: CP4AL_PIG (Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus scrofa GN=CYP4A21 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 38/148 (25.68%), Postives = 71/148 (47.97%), Query Frame = 2
Query:    2 YEMMKNPRVMKKAQAEVREVFNRKGKVDETGINEMKYLKLVVKETLRLHPSAPLILRECGDSCEI-NGFNIPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFE 442
            Y +  NP   ++ + E++ +      +    +++M Y  + +KE LRL+P  P + RE        +G ++PA   + ++ +    +P  W  PE F P RF   S  +   +  ++PF  G R C G  F +  +++ +A+ L  FE
Sbjct:  329 YALASNPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPSVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVWPNPEEFDPSRFAPGSARH---SHAFMPFSGGSRNCIGKQFAMNEMKVVVALTLLRFE 473          
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: CP1A2_CANFA (Cytochrome P450 1A2 OS=Canis familiaris GN=CYP1A2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 45/171 (26.32%), Postives = 80/171 (46.78%), Query Frame = 2
Query:    8 MMKNPRVMKKAQAEVREVFNRKGKVDETGINEMKYLKLVVKETLRLHPSAPLIL-RECGDSCEINGFNIPAKARVIVNSWATGRDPMYWTEPESFIPERFI--DHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHFEWKLPNGMKHEDLDMTEAFGATVR 511
            ++ NP + ++ Q E+  V  R  +   +   ++  ++  + E  R     P  +         + GF IP +  V +N W    D   W +P +F PERF+  D +   K  + + + FG G+R C G       + L LA+LL   E+ +P G+K   +D+T  +G T++
Sbjct:  329 LVANPEIQRQIQKELDTVIGRARQPRLSDRPQLPLMEAFILEIFRHTSFVPFTIPHSTTKDTTLKGFYIPKECCVFINQWQVNHDQQVWGDPFAFRPERFLTADGTTINKTLSEKVMLFGMGKRRCIGEVLAKWEIFLFLAILLQRLEFSVPAGVK---VDLTPIYGLTMK 496          
The following BLAST results are available for this feature:
BLAST of FC923645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 472
Match NameE-valueIdentityDescription
CP11A_HUMAN2.538e-1233.80Cholesterol side-chain cleavage enzyme, mitochondr... [more]
C5084_DICDI2.538e-1230.43Probable cytochrome P450 508A4 OS=Dictyostelium di... [more]
CP2J2_HUMAN3.315e-1226.29Cytochrome P450 2J2 OS=Homo sapiens GN=CYP2J2 PE=1... [more]
CP26A_CHICK3.315e-1231.82Cytochrome P450 26A1 OS=Gallus gallus GN=CYP26A1 P... [more]
CP120_SYNY33.315e-1233.33Putative cytochrome P450 120 OS=Synechocystis sp. ... [more]
CP4B1_RAT4.329e-1227.81Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1... [more]
CP2R1_HUMAN4.329e-1230.61Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1... [more]
CP27A_RABIT4.329e-1231.17Sterol 26-hydroxylase, mitochondrial OS=Oryctolagu... [more]
CP4AL_PIG5.654e-1225.68Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus s... [more]
CP1A2_CANFA5.654e-1226.32Cytochrome P450 1A2 OS=Canis familiaris GN=CYP1A2 ... [more]

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Properties
Property NameValue
Genbank descriptionC31707D10EF StrClemenN Citrus clementina cDNA clone C31707D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923645 ID=FC923645; Name=FC923645; organism=Citrus clementina; type=EST; length=689bp
GTATGAAATGATGAAAAATCCTAGAGTGATGAAGAAGGCACAAGCTGAGG
TGAGAGAAGTGTTTAATAGAAAAGGAAAGGTCGATGAAACGGGCATCAAT
GAAATGAAATACTTGAAGCTGGTTGTCAAAGAGACCCTGAGATTACATCC
TTCTGCACCTTTAATTCTAAGAGAATGTGGAGACAGTTGTGAGATTAACG
GATTCAACATTCCTGCAAAAGCCAGAGTCATTGTTAATTCATGGGCAACT
GGAAGAGATCCCATGTATTGGACTGAACCTGAGAGCTTTATTCCCGAGAG
ATTCATTGACCATTCTGTTGACTACAAGGGGACTAATTTTGAGTACATCC
CATTTGGTGCTGGTAGGAGGATATGCCCTGGAATGTCATTTGGTCTGGCC
AGCGTGGAGCTTACACTCGCGATGTTATTATACCATTTCGAATGGAAACT
ACCAAATGGAATGAAGCATGAGGATTTGGACATGACAGAGGCCTTTGGCG
CGACAGTAAGAAGAAAACAAGATCTGTGCATGATTCCTATTCCACACTGT
TAAGGAAGCTCACACTTGTAGTGTAGTCAGCAGAGCAGAGGATGATAGTA
GCAGGATCAATCAGTTACACATTGATGATGTGGCATGCCACGTCATGCCT
GGTGATTATGAAATTATGTGTACACGTGATTGATTAGTT
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