FC923645

Overview
NameFC923645
Unique NameFC923645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: CP11A_BOVIN (Cholesterol side-chain cleavage enzyme, mitochondrial OS=Bos taurus GN=CYP11A1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = 2
Query:    2 YEMMKNPRVMKKAQAEVREVFNRKGKVDETGINEM-KYLKLVVKETLRLHPSAPLILRECGDSCEINGFNIPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAML 427
            YEM ++  V +  + EV     R+ + D + + +M   LK  +KETLRLHP +  + R       +  + IPAK  V V  +A GRDP +++ P+ F P R++    D    +F  + FG G R C G    +A +E+TL ++
Sbjct:  339 YEMARSLNVQEMLREEVLNA-RRQAEGDISKMLQMVPLLKASIKETLRLHPISVTLQRYPESDLVLQDYLIPAKTLVQVAIYAMGRDPAFFSSPDKFDPTRWLSKDKDL--IHFRNLGFGWGVRQCVGRR--IAELEMTLFLI 476          
BLAST of FC923645 vs. ExPASy Swiss-Prot
Match: C4G15_DROME (Cytochrome P450 4g15 OS=Drosophila melanogaster GN=Cyp4g15 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 37/115 (32.17%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  101 EMKYLKLVVKETLRLHPSAPLILRECGDSCEINGFN--IPAKARVIVNSWATGRDPMYWTEPESFIPERFIDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELTLAMLLYHF 439
            EMKYL+  + ETLR++P  PLI RE  +  ++N  N  IP  A V V +    R+P  +  P  F P+ F+          + ++PF AG R C G  + +  +++ L+ +L ++
Sbjct:  427 EMKYLERCLMETLRMYPPVPLIARELQEDLKLNSGNYVIPRGATVTVATVLLHRNPKVYANPNVFDPDNFLPER-QANRHYYAFVPFSAGPRSCVGRKYAMLKLKILLSTILRNY 540          
The following BLAST results are available for this feature:
BLAST of FC923645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 472
Match NameE-valueIdentityDescription
CP11A_BOVIN8.165e-1132.87Cholesterol side-chain cleavage enzyme, mitochondr... [more]
C4G15_DROME8.165e-1132.17Cytochrome P450 4g15 OS=Drosophila melanogaster GN... [more]

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Properties
Property NameValue
Genbank descriptionC31707D10EF StrClemenN Citrus clementina cDNA clone C31707D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923645 ID=FC923645; Name=FC923645; organism=Citrus clementina; type=EST; length=689bp
GTATGAAATGATGAAAAATCCTAGAGTGATGAAGAAGGCACAAGCTGAGG
TGAGAGAAGTGTTTAATAGAAAAGGAAAGGTCGATGAAACGGGCATCAAT
GAAATGAAATACTTGAAGCTGGTTGTCAAAGAGACCCTGAGATTACATCC
TTCTGCACCTTTAATTCTAAGAGAATGTGGAGACAGTTGTGAGATTAACG
GATTCAACATTCCTGCAAAAGCCAGAGTCATTGTTAATTCATGGGCAACT
GGAAGAGATCCCATGTATTGGACTGAACCTGAGAGCTTTATTCCCGAGAG
ATTCATTGACCATTCTGTTGACTACAAGGGGACTAATTTTGAGTACATCC
CATTTGGTGCTGGTAGGAGGATATGCCCTGGAATGTCATTTGGTCTGGCC
AGCGTGGAGCTTACACTCGCGATGTTATTATACCATTTCGAATGGAAACT
ACCAAATGGAATGAAGCATGAGGATTTGGACATGACAGAGGCCTTTGGCG
CGACAGTAAGAAGAAAACAAGATCTGTGCATGATTCCTATTCCACACTGT
TAAGGAAGCTCACACTTGTAGTGTAGTCAGCAGAGCAGAGGATGATAGTA
GCAGGATCAATCAGTTACACATTGATGATGTGGCATGCCACGTCATGCCT
GGTGATTATGAAATTATGTGTACACGTGATTGATTAGTT
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