FC923656

Overview
NameFC923656
Unique NameFC923656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923656 vs. ExPASy Swiss-Prot
Match: PCY1B_RAT (Choline-phosphate cytidylyltransferase B OS=Rattus norvegicus GN=Pcyt1b PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 52/156 (33.33%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  164 VYIDGAFDLFHAGHVEILKKARQL--GDLLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKK 625
            VY DG FDLFH+GH   L +A+ L     LLVG+ +D +  + +G    +M+  ER  ++  CRYVDEVI  APW +T + +    I  V H  +  ++    G  D Y+  K  G+F   +  + I+T+ +  RI+ +++ Y +RN ++  + K+
Sbjct:   79 VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKG--FTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSS---AGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKE 229          
BLAST of FC923656 vs. ExPASy Swiss-Prot
Match: PCY1B_MOUSE (Choline-phosphate cytidylyltransferase B OS=Mus musculus GN=Pcyt1b PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 52/156 (33.33%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  164 VYIDGAFDLFHAGHVEILKKARQL--GDLLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKK 625
            VY DG FDLFH+GH   L +A+ L     LLVG+ +D +  + +G    +M+  ER  ++  CRYVDEVI  APW +T + +    I  V H  +  ++    G  D Y+  K  G+F   +  + I+T+ +  RI+ +++ Y +RN ++  + K+
Sbjct:   79 VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKG--FTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSS---AGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKE 229          
BLAST of FC923656 vs. ExPASy Swiss-Prot
Match: PCY1B_HUMAN (Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 52/156 (33.33%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  164 VYIDGAFDLFHAGHVEILKKARQL--GDLLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKK 625
            VY DG FDLFH+GH   L +A+ L     LLVG+ +D +  + +G    +M+  ER  ++  CRYVDEVI  APW +T + +    I  V H  +  ++    G  D Y+  K  G+F   +  + I+T+ +  RI+ +++ Y +RN ++  + K+
Sbjct:   79 VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKG--FTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSS---AGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKE 229          
BLAST of FC923656 vs. ExPASy Swiss-Prot
Match: PCY1_SCHPO (Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe GN=SPCC1827.02c PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 49/156 (31.41%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  164 VYIDGAFDLFHAGHVEILKKARQL--GDLLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKK 625
            VY DG FDLFH GH+  L++A+++     L+VG+  DQ+   HR     +M+  ER+ ++  C++VDEV+  APW +T + +    I  V H  +   +       D Y   K +G F   +  + ++T+ +  RII +++ Y+ RN  + V+ K+
Sbjct:  104 VYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLT--HRLKGLTVMNDKERAEALRHCKWVDEVLENAPWVITPEFLEEHKIDFVAHDDIPYAS---DDSGDIYLPVKKVGKFIPTKRTEGVSTSDLITRIIRDYDQYVMRNLARGVNRKE 254          
BLAST of FC923656 vs. ExPASy Swiss-Prot
Match: PCY1_CAEEL (Putative choline-phosphate cytidylyltransferase OS=Caenorhabditis elegans GN=F08C6.2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 47/156 (30.13%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  164 VYIDGAFDLFHAGHVEILKKARQL--GDLLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKK 625
            +Y DG +DLFH GH   L++ +++     L+VG+  D+   +++G    +    ER   V  CRYVDEV   APW  T + +    +  + H  +        G+ D YE  +  G+F   E  + ++T+ V  RII +++ Y++RN ++  S K+
Sbjct:   83 IYADGIYDLFHHGHANQLRQVKKMFPNVYLIVGVCGDRDTHKYKG--RTVTSEEERYDGVRHCRYVDEVYREAPWFCTVEFLKNLKVDFIAHDAIPYV---APGEEDLYEKFRREGMFLETERTEGVSTSDVVCRIIRDYDKYVRRNLQRGYSPKE 233          
BLAST of FC923656 vs. ExPASy Swiss-Prot
Match: ECT1_SCHPO (Probable ethanolamine-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe GN=SPAC15E1.05c PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 43/137 (31.39%), Postives = 81/137 (59.12%), Query Frame = 2
Query:  164 VYIDGAFDLFHAGHVEILKKARQLGDLLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIAN 574
            +++DG  D FH GH   + +A+QLG+ L++GI++D+ ++ ++G   P+M L ER LS   C++VDEV+  AP+    + +  +    VVHG   + +T   G  D Y  AK+   +  ++  + ++TT +  R++++
Sbjct:   11 LWLDGCMDFFHYGHSNAILQAKQLGETLVIGIHSDEEITLNKGP--PVMTLEERCLSANTCKWVDEVVPSAPYVFDLEWMRRYGCQYVVHG--DDISTDANG-DDCYRFAKAADQYLEVKRTEGVSTTELLDRLLSS 142          
BLAST of FC923656 vs. ExPASy Swiss-Prot
Match: PCY1_YEAST (Choline-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae GN=PCT1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 44/156 (28.21%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  164 VYIDGAFDLFHAGHVEILKKARQL--GDLLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKK 625
            +Y DG FDLFH GH++ L++ ++      L+VG+ +D+I  + +G    ++   +R  ++  CR+VDEV+  APW VT + +    I  V H  +   +       D Y+  K MG F   +    ++T+ +  +II +++ Y+ RN  +  + ++
Sbjct:  106 IYADGVFDLFHLGHMKQLEQCKKAFPNVTLIVGVPSDKITHKLKGL--TVLTDKQRCETLTHCRWVDEVVPNAPWCVTPEFLLEHKIDYVAHDDIPYVS---ADSDDIYKPIKEMGKFLTTQRTNGVSTSDIITKIIRDYDKYLMRNFARGATRQE 256          
BLAST of FC923656 vs. ExPASy Swiss-Prot
Match: PCY1_PLAFK (Choline-phosphate cytidylyltransferase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CTP PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 50/178 (28.09%), Postives = 91/178 (51.12%), Query Frame = 2
Query:  137 KGPGPNAR--VVYIDGAFDLFHAGHVEILKKARQLGD--LLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT-------PLTGQS--------DPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAV 613
            KG   N++  V+Y DG +D+ H GH++ L++A++L +   L+VG+ +D      +G    +  L ER+ ++   R+VDE+I   PW VT + +  + I  V H  +   N           G+S        D Y   K  G F+  +  + ++TT +  RI+ N+E Y++R+ ++ +
Sbjct:   83 KGSIKNSKNVVIYADGVYDMLHLGHMKQLEQAKKLFENTTLIVGVTSDNETKLFKGQV--VQTLEERTETLKHIRWVDEIISPCPWVVTPEFLEKYKIDYVAHDDIPYANNQKKKKKKKSKGKSFSFDEENEDIYAWLKRAGKFKATQRTEGVSTTDLIVRILKNYEDYIERSLQRGI 258          
The following BLAST results are available for this feature:
BLAST of FC923656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PCY1B_RAT2.282e-1933.33Choline-phosphate cytidylyltransferase B OS=Rattus... [more]
PCY1B_MOUSE2.282e-1933.33Choline-phosphate cytidylyltransferase B OS=Mus mu... [more]
PCY1B_HUMAN2.282e-1933.33Choline-phosphate cytidylyltransferase B OS=Homo s... [more]
PCY1_SCHPO6.871e-1631.41Probable choline-phosphate cytidylyltransferase OS... [more]
PCY1_CAEEL6.871e-1630.13Putative choline-phosphate cytidylyltransferase OS... [more]
ECT1_SCHPO1.172e-1531.39Probable ethanolamine-phosphate cytidylyltransfera... [more]
PCY1_YEAST9.921e-1528.21Choline-phosphate cytidylyltransferase OS=Saccharo... [more]
PCY1_PLAFK6.431e-1428.09Choline-phosphate cytidylyltransferase OS=Plasmodi... [more]

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Properties
Property NameValue
Genbank descriptionC31707E09EF StrClemenN Citrus clementina cDNA clone C31707E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923656 ID=FC923656; Name=FC923656; organism=Citrus clementina; type=EST; length=717bp
GGAGGATACAAAAGCTTGCGAAGATCATAATAATGCATCCTTGCCAAGAG
ATCCTCTTAGAGCAATTCAATCTAAGGATGCCCATTTATCTCAATTTCTA
CCAACATCACGAAGGATTGTGCAGTTTTCAAATTGCAAGGGACCTGGTCC
AAATGCTCGTGTTGTGTACATTGATGGGGCATTTGATCTCTTCCATGCAG
GACATGTTGAGATTCTCAAGAAGGCTAGGCAGCTTGGAGACCTTCTTTTA
GTTGGCATTTACACTGACCAGATAGTGAGTGAGCACAGAGGGAGCTACCA
CCCAATTATGCATCTACATGAGCGTAGTCTTAGTGTGTTGGCATGTCGTT
ATGTTGATGAAGTCATAATTGGTGCACCTTGGGAGGTTACTAAGGACATG
ATAACCACTTTCAACATCTGTTTGGTTGTGCATGGGACAGTTTCAGAGAC
CAACACTCCATTGACTGGTCAAAGCGATCCTTATGAAGTTGCCAAAAGCA
TGGGAATTTTCCAGTTACTTGAAAGTCCTAAAAGTATAACCACCACATCA
GTGGCCCAAAGGATAATTGCCAATCACGAGGCCTACATGAAACGCAATGC
GAAGAAAGCAGTGAGTGAGAAGAAGTATTACGAACAGAAGATGTTTGTAT
CAGGAGATTAGGAGGAAATAGAATTTTATAGCAAGTTTGGTACAGTTCAT
CCGCAGCCTTGCCGTAT
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