FC923657

Overview
NameFC923657
Unique NameFC923657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923657 vs. ExPASy Swiss-Prot
Match: PLDA_DICDI (Phospholipase D A OS=Dictyostelium discoideum GN=pldA PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 60/192 (31.25%), Postives = 92/192 (47.92%), Query Frame = 2
Query:   38 PALD--CTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKD-DYHNPTF------------TGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERW 568
            P+LD    L  LL+ K+ +GV++ +++WD+    +  G K          + +    H+++KV+  P I            +   ++HHQKT+I+D +        IAFVGG+D C GR+D   H L     TL K  DY+NP              + +    PR PWHD+ + ++G AA DV  NF  RW
Sbjct:  372 PSLDERYRLDNLLKRKAMQGVKIFIILWDETKIATFKGSKR--------AKDKLEELHTNIKVIKHPPI------------IPIYWSHHQKTLIIDQE--------IAFVGGVDFCFGRFDTWCHHLIDVNSTLWKGKDYYNPILGDMGDILVPFEDSVDRKKIPRMPWHDVMAGVNGLAARDVALNFILRW 535          
BLAST of FC923657 vs. ExPASy Swiss-Prot
Match: PLDB_DICDI (Phospholipase D B OS=Dictyostelium discoideum GN=pldB PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 60/191 (31.41%), Postives = 86/191 (45.03%), Query Frame = 2
Query:   56 LGELLRSKSQEGVRVLLLVWDDPTSRSILGYK-----MDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTL-QTLHKDDYHNPTFTGNTTG-----------CPREPWHDLHSKIDGPAAYDVLTNFEERWRKA 577
            L  +L  K++EGV+V +L+W++      LG +     ++G              HS++ V+  P            K     ++HHQK  I+D          IAFVGG+D+C  RY+     L     +     DY N   T   TG           CPR PWHD+H+KI GP+A DV +NF +RW  A
Sbjct:  530 LDRILTEKAKEGVKVYVLMWNETNLGVQLGSRHAKNWLEGC-------------HSNIHVIRHP------------KRYPLSWSHHQKNAIIDQQ--------IAFVGGIDICLMRYETSKFQLTDDQGKRFPGKDYGNLLGTVIRTGDPKKDQFNRRECPRMPWHDVHTKIVGPSAKDVASNFIQRWNHA 687          
BLAST of FC923657 vs. ExPASy Swiss-Prot
Match: PLDP1_ARATH (Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 60/202 (29.70%), Postives = 90/202 (44.55%), Query Frame = 2
Query:   20 LVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCP-RIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQ-TLHKDDYHNPTFTGNTTG------------CPREPWHDLHSKIDGPAAYDVLTNFEERWRKAPK 583
            L R   P     L  LL +K+++GV++ +L++ +      L  K++ V      + R +  H +V+VL  P   +   + W+          HH+K VIVD          + F+GGLDLC GRYD   H +      T    DY+NP  +   T              PR PWHD+H  + GP   DV  +F +RW  A +
Sbjct:  407 LRRPFDPHTSSRLDNLLENKAKQGVQIYILIYKEVA----LALKINSVYS----KRRLLGIHENVRVLRYPDHFSSGVYLWS----------HHEKLVIVDNQ--------VCFIGGLDLCFGRYDTFEHKVGDNPSVTWPGKDYYNPRESEPNTWEDALKDELERKKHPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKR 582          
BLAST of FC923657 vs. ExPASy Swiss-Prot
Match: PLDP2_ARATH (Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 58/202 (28.71%), Postives = 90/202 (44.55%), Query Frame = 2
Query:   56 LGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCP-RIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKD-DYHNPTFTGNTTG------------CPREPWHDLHSKIDGPAAYDVLTNFEERW-----RKAPKPHGIKKL 604
            L  LL +K+++GV++ +L++ +      +  K++ +      + R    H +VKVL  P  ++   + W+          HH+K VIVD          + F+GGLDLC GRYD   H +      +    DY+NP  +   +              PR PWHD+H  + GP   DV  +F +RW      KAP    I  L
Sbjct:  414 LDALLETKAKQGVKIYILLYKEVQ----IALKINSLYS----KKRLQNIHKNVKVLRYPDHLSSGIYLWS----------HHEKIVIVDYQ--------VCFIGGLDLCFGRYDTAEHKIGDCPPYIWPGKDYYNPRESEPNSWEETMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNHSKRNKAPNEQTIPLL 589          
BLAST of FC923657 vs. ExPASy Swiss-Prot
Match: PLD_PHYIN (Phospholipase D OS=Phytophthora infestans GN=PLD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 51/185 (27.57%), Postives = 77/185 (41.62%), Query Frame = 2
Query:   56 LGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQ--TLHKDDYHNPTFTG------------NTTGCPREPWHDLHSKIDGPAAYDVLTNFEERW 568
            L ++L  K++ GV++ +L++ +      L               R +  H +++VL  P           Q +    ++HH+K V +D          +AFVGGLDLC GRYD+  HP+            DY NP                +    PR PWHD+H  I GP   DV  +  +RW
Sbjct:  796 LRQVLMKKAEAGVKIYVLIYREVKLALTLNSAYT---------KRSLMVHPNIRVLRDPIF---------QIQSLGFWSHHEKIVCIDQS--------LAFVGGLDLCFGRYDHHGHPISDPSDDPVWTGKDYSNPIIKDFVRVNKPFEDLIDRASQPRMPWHDVHCSISGPPVQDVAYHLIQRW 954          
The following BLAST results are available for this feature:
BLAST of FC923657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PLDA_DICDI2.438e-1631.25Phospholipase D A OS=Dictyostelium discoideum GN=p... [more]
PLDB_DICDI1.024e-1431.41Phospholipase D B OS=Dictyostelium discoideum GN=p... [more]
PLDP1_ARATH8.670e-1429.70Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP... [more]
PLDP2_ARATH4.757e-1228.71Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP... [more]
PLD_PHYIN3.084e-1127.57Phospholipase D OS=Phytophthora infestans GN=PLD P... [more]

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Properties
Property NameValue
Genbank descriptionC31707E10EF StrClemenN Citrus clementina cDNA clone C31707E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923657 ID=FC923657; Name=FC923657; organism=Citrus clementina; type=EST; length=727bp
GGTTTGGCACAAAGTTAAACTGGTTCGGGATGCGAGTCCTGCATTAGATT
GCACCCTTGGGGAACTTCTAAGATCAAAGTCCCAGGAAGGAGTGAGAGTG
CTGCTTCTTGTTTGGGATGACCCTACTTCGAGGAGTATTTTGGGTTATAA
AATGGATGGAGTTATGCAAACCCATGATGAGGAAACACGTCGTGTTTTCA
AGCACTCGTCTGTGAAGGTGCTACTTTGTCCCCGCATTGCTGGAAAACGA
CATAGTTGGGCCAAACAAAAGGAAGTTGGAACAATCTACACGCACCATCA
GAAAACAGTAATTGTAGATGCTGATGCTGGTTATAATAGAAGGAAAATCA
TTGCTTTTGTTGGTGGCCTTGATTTATGTGATGGGCGATACGATAATCCA
CATCATCCTCTTTTTAGGACATTACAGACACTGCATAAGGACGACTATCA
CAATCCTACTTTCACGGGTAATACTACTGGTTGCCCACGAGAACCATGGC
ATGACTTGCATTCAAAAATTGATGGTCCAGCAGCATATGACGTTTTAACG
AACTTTGAGGAGCGTTGGCGAAAGGCTCCAAAACCTCACGGGATTAAGAA
ACTGAAGTCTGGGGATGATGCTTTGCTTAGGATAGAAAGAATTCCAGGCA
TTATAGGCATCTCTGATGCTCCTTCTGTTAGAGAGAATGATGCTGAATCT
TGGCATGNTCAGATTTTTCGTTCAATT
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