FC923738
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11 Identity = 65/195 (33.33%), Postives = 89/195 (45.64%), Query Frame = 2 Query: 185 DQGPSFYGT-PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDEHMDFFKDFVXSEDSIHI 721 + P F G P +S N + + P V + G+PF E DV EFFHGL D V +L H +NN G P AL+RNR M +RYVEV + +++ A I + S G H +++PR+KS K S + + L+GLPF A +DFFK EDSI+I Sbjct: 271 NMNPVFLGPLNPVNSIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI 462
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: SYM2_CAEEL (RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11 Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFFKDF--VXSEDSIHITMN 730 +VR+RGLP+DCT+ + FF L + D +LF+ + + + TG+AF L ++RQ +G+RY+E+F+S E + + ++ SP + ++ KD +RLRGLP+ A + F DF + +H+ N Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKR--CNLINSSPAVANAVEAPEEKKKD------CVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYN 426
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP2_CHICK (Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11 Identity = 43/136 (31.62%), Postives = 75/136 (55.15%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDF 682 V+R RGLP+ ++ D+A FF GL+I L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K + GG+ + + K++ V I+R+RGLPF+A +++ + F Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLK--------IAGGTSNE-----VAQFLSKENQV---IIRMRGLPFTATQEDVLGF 346
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP1_XENTR (Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis GN=esrp1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11 Identity = 43/137 (31.39%), Postives = 74/137 (54.01%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 ++R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A +E + FF Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFF 347
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP1_XENLA (Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11 Identity = 43/137 (31.39%), Postives = 74/137 (54.01%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 ++R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A +E + FF Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFF 347
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP1_RAT (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11 Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A +E + FF Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFF 346
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP1_MOUSE (Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11 Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A +E + FF Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFF 345
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP1_HUMAN (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11 Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A +E + FF Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFF 346 The following BLAST results are available for this feature:
BLAST of FC923738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923738 ID=FC923738; Name=FC923738; organism=Citrus clementina; type=EST; length=730bpback to top |