FC923738

Overview
NameFC923738
Unique NameFC923738
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 65/195 (33.33%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  185 DQGPSFYGT-PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDEHMDFFKDFVXSEDSIHI 721
            +  P F G   P +S   N   +   +   P    V + G+PF   E DV EFFHGL  D V +L  H  +NN   G        P     AL+RNR  M +RYVEV  +  +++  A   I  + S    G  H   +++PR+KS    K S   +       + L+GLPF A     +DFFK     EDSI+I
Sbjct:  271 NMNPVFLGPLNPVNSIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI 462          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: SYM2_CAEEL (RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFFKDF--VXSEDSIHITMN 730
            +VR+RGLP+DCT+  +  FF  L + D +LF+ + + + TG+AF            L ++RQ +G+RY+E+F+S   E  + +     ++   SP  +       ++ KD       +RLRGLP+ A     + F  DF  +     +H+  N
Sbjct:  282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKR--CNLINSSPAVANAVEAPEEKKKD------CVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYN 426          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP2_CHICK (Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 43/136 (31.62%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDF 682
            V+R RGLP+  ++ D+A FF GL+I      L ++   +  GEA        Q D AL+R++ +MG RY+EV+++  +E+ K        + GG+ +       +    K++ V   I+R+RGLPF+A +++ + F
Sbjct:  227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLK--------IAGGTSNE-----VAQFLSKENQV---IIRMRGLPFTATQEDVLGF 346          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP1_XENTR (Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis GN=esrp1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 43/137 (31.39%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            ++R RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  +E + FF
Sbjct:  227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFF 347          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP1_XENLA (Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 43/137 (31.39%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            ++R RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  +E + FF
Sbjct:  227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFF 347          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP1_RAT (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            VVR RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  +E + FF
Sbjct:  226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFF 346          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP1_MOUSE (Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            VVR RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  +E + FF
Sbjct:  225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFF 345          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP1_HUMAN (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            VVR RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  +E + FF
Sbjct:  226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFF 346          
The following BLAST results are available for this feature:
BLAST of FC923738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RBM12_MOUSE4.059e-1133.33RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE... [more]
SYM2_CAEEL6.923e-1129.41RNA-binding protein sym-2 OS=Caenorhabditis elegan... [more]
ESRP2_CHICK9.042e-1131.62Epithelial splicing regulatory protein 2 OS=Gallus... [more]
ESRP1_XENTR9.042e-1131.39Epithelial splicing regulatory protein 1 OS=Xenopu... [more]
ESRP1_XENLA9.042e-1131.39Epithelial splicing regulatory protein 1 OS=Xenopu... [more]
ESRP1_RAT9.042e-1132.85Epithelial splicing regulatory protein 1 OS=Rattus... [more]
ESRP1_MOUSE9.042e-1132.85Epithelial splicing regulatory protein 1 OS=Mus mu... [more]
ESRP1_HUMAN9.042e-1132.85Epithelial splicing regulatory protein 1 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC31708D08EF StrClemenN Citrus clementina cDNA clone C31708D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923738 ID=FC923738; Name=FC923738; organism=Citrus clementina; type=EST; length=730bp
AAATGCAGGGAGAGCAAGAAGCTCGAAGAAACACAAAGATTAAGAAATAA
ACAAGGGTTAAAAAAAAAAAAAAATTTGGATAGCTCACGGCTCAACTATT
TCAAATTTAAGAATGTTCTACAGAGGCAAGTTTGCTGAGGGTGCTGATGG
GCGTGAAATGGGGGCAAAGCGTCAACGGTTGATTGATCAGGGACCTTCAT
TTTATGGAACTCCCCCAAGTTCAAGTTTTATGTACAATCCACCACCAGCT
TATGGGTACGTTAGCCAACCTCCACCTTTCCCAGTTGTCCGACTTCGCGG
TCTTCCCTTTGATTGTACAGAAGTTGATGTTGCTGAGTTTTTCCATGGTC
TAGACATAGTCGATGTTCTTTTTGTCCATAAGAACAACAAATTTACAGGA
GAAGCTTTTTGTGTGCTGGGGTATCCTCTTCAAGTCGATTTTGCCCTGCA
GAGGAATAGGCAGAACATGGGAAGGAGGTATGTTGAGGTTTTCAGAAGTA
AGAGGCAGGAATATTATAAGGCAATAGCAAATGAAGTTTCTGATGTTCGT
GGTGGTTCACCACATAGGAGTATCCCTAGGGCTAAATCTCATGATGAGGG
GAAGGATTCAGCTGTACATACAGGGATACTGCGATTGAGAGGATTGCCAT
TTTCAGCAGGCAAGGATGAACATATGGATTTCTTTAAAGATTTTGTGNTG
TCGGAAGACTCGATTCATATTACTATGAAT
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