FC923937

Overview
NameFC923937
Unique NameFC923937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PSE14 (Urease accessory protein ureG OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.728e-51
Identity = 101/153 (66.01%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  163 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            N +   VGIGGPVG+GKTAL LALC  LRD+Y+LA VTNDI+T+ED +FL+RN AL  ERI  VETGGCPH AIRED SINL  +++L+   +  DL++ ESGGDNL+A FS EL+D  IY+IDVS GDK+PRKGGPGI ++DLLVINK DLA
Sbjct:    2 NSQPLRVGIGGPVGSGKTALTLALCLALRDRYNLAVVTNDIYTREDADFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFEGLDLIIVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLA 154          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURVG (Urease accessory protein ureG OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.728e-51
Identity = 106/173 (61.27%), Postives = 125/173 (72.25%), Query Frame = 1
Query:  103 PIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            P  SP   +++ PP+           VGIGGPVG+GKT L+  LCK +RD Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++  LS    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:    4 PASSPARRTKKLPPL----------RVGIGGPVGSGKTTLLEMLCKAMRDTYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 166          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURCM (Urease accessory protein ureG OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.728e-51
Identity = 105/173 (60.69%), Postives = 126/173 (72.83%), Query Frame = 1
Query:  103 PIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            P  SP   +++ PP+           VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++  LS    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:    4 PALSPARRTKKLPPL----------RVGIGGPVGSGKTTLLEMLCKAMRERYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 166          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURA4 (Urease accessory protein ureG OS=Burkholderia ambifaria (strain MC40-6) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.728e-51
Identity = 105/173 (60.69%), Postives = 126/173 (72.83%), Query Frame = 1
Query:  103 PIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            P  SP   +++ PP+           VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++  LS    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:    4 PALSPARRTKKLPPL----------RVGIGGPVGSGKTTLLEMLCKAMRERYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 166          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_THEEB (Urease accessory protein ureG OS=Thermosynechococcus elongatus (strain BP-1) GN=ureG PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.257e-51
Identity = 100/152 (65.79%), Postives = 119/152 (78.29%), Query Frame = 1
Query:  166 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            E    VG+ GPVG+GKTAL+ ALCK LRD+Y LA VTNDI+T+ED +FL+R+ ALP ERI  VETGGCPH AIRED S+NL  +++L    +  DL+  ESGGDNLAA FS EL D  IY+IDV+ GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    2 ETVLRVGVAGPVGSGKTALVDALCKALRDRYRLAVVTNDIYTQEDAQFLVRSQALPPERILGVETGGCPHTAIREDASLNLAAIQQLETAFRPLDLIFVESGGDNLAATFSPELVDLTIYVIDVAAGDKIPRKGGPGITKSDLLVINKIDLA 153          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PSEFS (Urease accessory protein ureG OS=Pseudomonas fluorescens (strain SBW25) GN=ureG PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.257e-51
Identity = 102/153 (66.67%), Postives = 121/153 (79.08%), Query Frame = 1
Query:  163 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            N +   VGIGGPVG+GKTAL LALC  LRD+Y+LA VTNDI+T+ED +FL+RN AL  ERI  VETGGCPH AIRED SINL  +++L+      DL+L ESGGDNL+A FS EL+D  IY+IDVS GDK+PRKGGPGI ++DLLVINK DLA
Sbjct:    2 NTQPLRVGIGGPVGSGKTALTLALCLALRDRYNLAVVTNDIYTREDADFLVRNQALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLDLILVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLA 154          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG1_METEP (Urease accessory protein ureG 1 OS=Methylobacterium extorquens (strain PA1) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.257e-51
Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTALM  LC+  RD Y + A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+     K DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLL++NKTDLA
Sbjct:   10 VGIGGPVGSGKTALMEQLCRRFRDSYEICAITNDIYTKEDARILTVAGALPEERILGVETGGCPHTAIREDASINLAAVAEMRRRFPKLDLVLIESGGDNLAATFSPELADLTLYVIDVAGGEKIPRKGGPGITRSDLLIVNKTDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURS3 (Urease accessory protein ureG OS=Burkholderia sp. (strain 383) GN=ureG PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.948e-51
Identity = 104/162 (64.20%), Postives = 120/162 (74.07%), Query Frame = 1
Query:  136 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            AP    R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++  LS    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:    5 APSSARRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 166          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURCH (Urease accessory protein ureG OS=Burkholderia cenocepacia (strain HI2424) GN=ureG PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.948e-51
Identity = 103/162 (63.58%), Postives = 121/162 (74.69%), Query Frame = 1
Query:  136 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            AP  + R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++  L+    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:    5 APSSIRRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 166          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURCA (Urease accessory protein ureG OS=Burkholderia cenocepacia (strain AU 1054) GN=ureG PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.948e-51
Identity = 103/162 (63.58%), Postives = 121/162 (74.69%), Query Frame = 1
Query:  136 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            AP  + R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++  L+    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:    5 APSSIRRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 166          
The following BLAST results are available for this feature:
BLAST of FC923937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UREG_PSE141.728e-5166.01Urease accessory protein ureG OS=Pseudomonas syrin... [more]
UREG_BURVG1.728e-5161.27Urease accessory protein ureG OS=Burkholderia viet... [more]
UREG_BURCM1.728e-5160.69Urease accessory protein ureG OS=Burkholderia ambi... [more]
UREG_BURA41.728e-5160.69Urease accessory protein ureG OS=Burkholderia ambi... [more]
UREG_THEEB2.257e-5165.79Urease accessory protein ureG OS=Thermosynechococc... [more]
UREG_PSEFS2.257e-5166.67Urease accessory protein ureG OS=Pseudomonas fluor... [more]
UREG1_METEP2.257e-5168.03Urease accessory protein ureG 1 OS=Methylobacteriu... [more]
UREG_BURS32.948e-5164.20Urease accessory protein ureG OS=Burkholderia sp. ... [more]
UREG_BURCH2.948e-5163.58Urease accessory protein ureG OS=Burkholderia ceno... [more]
UREG_BURCA2.948e-5163.58Urease accessory protein ureG OS=Burkholderia ceno... [more]

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Properties
Property NameValue
Genbank descriptionC31710F10EF StrClemenN Citrus clementina cDNA clone C31710F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923937 ID=FC923937; Name=FC923937; organism=Citrus clementina; type=EST; length=618bp
ACCGATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGAAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGACTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGCTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGATCTTCTGGTGATA
AACAAAACTGACCTTGCT
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