FC923937

Overview
NameFC923937
Unique NameFC923937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BORPE (Urease accessory protein ureG OS=Bordetella pertussis GN=ureG PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.855e-46
Identity = 91/147 (61.90%), Postives = 113/147 (76.87%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VG+GGPVG+GKT L+  +CK +  ++ L A+TNDI+TKED   L  +GALP ERI  VETGGCPH AIRED SINL  +++ L     AD++  ESGGDNLAA FS EL+D  +YIIDV+ G+KIPRKGGPGIT++DL +INKTDLA
Sbjct:   19 VGVGGPVGSGKTTLLEMVCKAMYPQFDLIAITNDIYTKEDQRLLTLSGALPPERILGVETGGCPHTAIREDASINLIAIDQMLEQFPDADIVFVESGGDNLAATFSPELSDLTLYIIDVASGEKIPRKGGPGITKSDLFIINKTDLA 165          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BORPA (Urease accessory protein ureG OS=Bordetella parapertussis GN=ureG PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.855e-46
Identity = 91/147 (61.90%), Postives = 113/147 (76.87%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VG+GGPVG+GKT L+  +CK +  ++ L A+TNDI+TKED   L  +GALP ERI  VETGGCPH AIRED SINL  +++ L     AD++  ESGGDNLAA FS EL+D  +YIIDV+ G+KIPRKGGPGIT++DL +INKTDLA
Sbjct:   19 VGVGGPVGSGKTTLLEMVCKAMYPQFDLIAITNDIYTKEDQRLLTLSGALPPERILGVETGGCPHTAIREDASINLIAIDQMLEQFPDADIVFVESGGDNLAATFSPELSDLTLYIIDVASGEKIPRKGGPGITKSDLFIINKTDLA 165          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BORBR (Urease accessory protein ureG OS=Bordetella bronchiseptica GN=ureG PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.855e-46
Identity = 91/147 (61.90%), Postives = 113/147 (76.87%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VG+GGPVG+GKT L+  +CK +  ++ L A+TNDI+TKED   L  +GALP ERI  VETGGCPH AIRED SINL  +++ L     AD++  ESGGDNLAA FS EL+D  +YIIDV+ G+KIPRKGGPGIT++DL +INKTDLA
Sbjct:   19 VGVGGPVGSGKTTLLEMVCKAMYPQFDLIAITNDIYTKEDQRLLTLSGALPPERILGVETGGCPHTAIREDASINLIAIDQMLEQFPDADIVFVESGGDNLAATFSPELSDLTLYIIDVASGEKIPRKGGPGITKSDLFIINKTDLA 165          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_LEPCP (Urease accessory protein ureG OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ureG PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.729e-46
Identity = 93/147 (63.27%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VG+GGPVG+GKT L+  LCK +R+++ L  VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED SINL  ++  L     AD++  ESGGDNLAA FS EL+D  IY+IDV+ G+KIPRKGGPGIT++DL VINKTDLA
Sbjct:   19 VGVGGPVGSGKTTLVEMLCKTMRERWDLVVVTNDIYTKEDQRLLTVAGALEPERIIGVETGGCPHTAIREDASINLEAVDRMLEKFPNADIVFIESGGDNLAATFSPELSDLTIYVIDVAAGEKIPRKGGPGITKSDLFVINKTDLA 165          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BLOPB (Urease accessory protein ureG OS=Blochmannia pennsylvanicus (strain BPEN) GN=ureG PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.729e-46
Identity = 92/155 (59.35%), Postives = 114/155 (73.55%), Query Frame = 1
Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            N   +   +G+GGPVG+GKTAL+  LCK ++D Y LA VTNDI+TKED   L+   AL  +RI  VETGGCPH AIRED S+NL  +EEL S     D++  ESGGDNL+A FS EL+D  +Y+IDV+ GDKIPRKGGPGIT++D L+INK DLA
Sbjct:    4 NQYRKPLRIGVGGPVGSGKTALLEVLCKRMKDSYQLAVVTNDIYTKEDQRILIDANALSADRIVGVETGGCPHTAIREDASMNLLAVEELISKFNNLDIIFIESGGDNLSATFSPELSDLNLYVIDVAAGDKIPRKGGPGITRSDFLIINKIDLA 158          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BLOFL (Urease accessory protein ureG OS=Blochmannia floridanus GN=ureG PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.729e-46
Identity = 92/158 (58.23%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  148 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +S +  +    VGIGGPVG+GKTAL+  LCK ++  Y LA VTNDI+TKED + L+   AL  +RI  VETGGCPH AIRED+S+NL  +EEL       D++  ESGGDNL+A FS EL+D+ +Y+IDV+ GDKIPRKGGPGIT++D L+INK DLA
Sbjct:    1 MSNDKAKHPMKVGIGGPVGSGKTALIEVLCKKMKTDYQLAVVTNDIYTKEDQQILINAHALESDRIIGVETGGCPHTAIREDVSMNLLAIEELIDKFNNLDIIFIESGGDNLSATFSPELSDWNLYVIDVAAGDKIPRKGGPGITKSDFLIINKIDLA 158          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_HELPS (Urease accessory protein ureG OS=Helicobacter pylori (strain Shi470) GN=ureG PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.871e-46
Identity = 89/147 (60.54%), Postives = 114/147 (77.55%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +G+ GPVG+GKTAL+ AL + +   Y +A +TNDI+TKED EF+ +N  +P +RI  VETGGCPH AIRED S+NL  +EE+       +LLL ESGGDNL+A F+ ELAD+ I++IDV+ GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    4 IGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRDRIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLLVINKIDLA 150          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_HELPJ (Urease accessory protein ureG OS=Helicobacter pylori J99 GN=ureG PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.871e-46
Identity = 89/147 (60.54%), Postives = 114/147 (77.55%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +G+ GPVG+GKTAL+ AL + +   Y +A +TNDI+TKED EF+ +N  +P +RI  VETGGCPH AIRED S+NL  +EE+       +LLL ESGGDNL+A F+ ELAD+ I++IDV+ GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    4 IGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRDRIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLLVINKIDLA 150          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_HELAH (Urease accessory protein ureG OS=Helicobacter acinonychis (strain Sheeba) GN=ureG PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.871e-46
Identity = 89/147 (60.54%), Postives = 114/147 (77.55%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +G+ GPVG+GKTAL+ AL + +   Y +A +TNDI+TKED EF+ +N  +P +RI  VETGGCPH AIRED S+NL  +EE+       +LLL ESGGDNL+A F+ ELAD+ I++IDV+ GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    4 IGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRDRIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLLVINKIDLA 150          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_ACTP7 (Urease accessory protein ureG OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=ureG PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.871e-46
Identity = 89/147 (60.54%), Postives = 115/147 (78.23%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +G+ GPVG GKTAL+  L + +  KYS+A +TNDI+T+ED EFL +N  LP ERI  VETGGCPH AIRED S+NL  ++E+ +   + +L+  ESGGDNL+A FS +LAD  I++IDV+ G+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:    7 IGVAGPVGAGKTALIERLTREIASKYSVAVITNDIYTQEDAEFLTKNSLLPPERIMGVETGGCPHTAIREDASMNLEAVDEMVARFPEVELIFIESGGDNLSATFSPDLADVTIFVIDVAQGEKIPRKGGPGITRSDLLVINKTDLA 153          
The following BLAST results are available for this feature:
BLAST of FC923937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UREG_BORPE2.855e-4661.90Urease accessory protein ureG OS=Bordetella pertus... [more]
UREG_BORPA2.855e-4661.90Urease accessory protein ureG OS=Bordetella parape... [more]
UREG_BORBR2.855e-4661.90Urease accessory protein ureG OS=Bordetella bronch... [more]
UREG_LEPCP3.729e-4663.27Urease accessory protein ureG OS=Leptothrix cholod... [more]
UREG_BLOPB3.729e-4659.35Urease accessory protein ureG OS=Blochmannia penns... [more]
UREG_BLOFL3.729e-4658.23Urease accessory protein ureG OS=Blochmannia flori... [more]
UREG_HELPS4.871e-4660.54Urease accessory protein ureG OS=Helicobacter pylo... [more]
UREG_HELPJ4.871e-4660.54Urease accessory protein ureG OS=Helicobacter pylo... [more]
UREG_HELAH4.871e-4660.54Urease accessory protein ureG OS=Helicobacter acin... [more]
UREG_ACTP74.871e-4660.54Urease accessory protein ureG OS=Actinobacillus pl... [more]

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Properties
Property NameValue
Genbank descriptionC31710F10EF StrClemenN Citrus clementina cDNA clone C31710F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923937 ID=FC923937; Name=FC923937; organism=Citrus clementina; type=EST; length=618bp
ACCGATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGAAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGACTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGCTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGATCTTCTGGTGATA
AACAAAACTGACCTTGCT
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