FC923937

Overview
NameFC923937
Unique NameFC923937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_MESSB (Urease accessory protein ureG OS=Mesorhizobium sp. (strain BNC1) GN=ureG PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 90/147 (61.22%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +GIGGPVG+GKT L   L K +RD+YS+A VTNDI+TKED   L R  A+ E+RI  VETGGCPH AIRED S+NL  +  L+      D++L ESGGDNLAA FS +LAD  +Y+I V+ G+KIPRKGGP IT++DLL+INKTDLA
Sbjct:   10 IGIGGPVGSGKTTLCEVLLKSMRDRYSMAVVTNDIYTKEDALILARLQAISEDRIVGVETGGCPHTAIREDASLNLAAIAHLNRRFPDLDIILIESGGDNLAATFSPDLADLTLYVISVAQGEKIPRKGGPAITRSDLLIINKTDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BRUSI (Urease accessory protein ureG OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=ureG PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L   LCK +RDKYS+A +TNDI+T+ED   L R  AL E+RI  VETGGCPH AIRED SINL  + E++      D++  ESGGDNLAA FS +LAD  +Y+I V  G++IPRKGGPGIT++D LVINK+DLA
Sbjct:   10 VGIGGPVGSGKTTLTEKLCKAMRDKYSVAVITNDIYTQEDALILARRQALSEDRIIGVETGGCPHTAIREDASINLQAVVEMTRRFPDLDVVFIESGGDNLAATFSPDLADLTLYVISVCQGEEIPRKGGPGITRSDFLVINKSDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BACHD (Urease accessory protein ureG OS=Bacillus halodurans GN=ureG PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 87/147 (59.18%), Postives = 110/147 (74.83%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +GIGGPVG+GKT L+  L + + + Y LA +TNDI+TKED +FL+++G LPE+RI  VETGGCPH AIRED S+N   + EL       D++  ESGGDNL+A FS EL D  IY+IDV+ G  IPRKGGPG+T++DLLVINK DLA
Sbjct:    6 IGIGGPVGSGKTHLVEQLTRAMHESYELAVITNDIYTKEDAQFLVKHGILPEDRIIGVETGGCPHTAIREDASMNFEAIHELKQRFTNLDIIFVESGGDNLSATFSPELVDGFIYVIDVAEGQDIPRKGGPGVTRSDLLVINKIDLA 152          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_AGRRK (Urease accessory protein ureG OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ureG PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 94/147 (63.95%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTAL   LCK +RD YS+A VTNDI+T ED E L+R  AL  +RI  VETGGCPH AIRED +INL  +  L+  L   D++  ESGGDNLAA FS +LAD  IY+I V  G++IPRKGGPGIT++DLLVINK DLA
Sbjct:   10 VGIGGPVGSGKTALTEKLCKAMRDDYSVAVVTNDIYTTEDAEALVRMQALTSDRIVGVETGGCPHTAIREDATINLQAIAGLNERLPDLDVVFIESGGDNLAATFSPDLADITIYVISVCQGEEIPRKGGPGITKSDLLVINKKDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG1_BRUSU (Urease accessory protein ureG 1 OS=Brucella suis GN=ureG1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L   LCK +RDKYS+A +TNDI+T+ED   L R  AL E+RI  VETGGCPH AIRED SINL  + E++      D++  ESGGDNLAA FS +LAD  +Y+I V  G++IPRKGGPGIT++D LVINK+DLA
Sbjct:   10 VGIGGPVGSGKTTLTEKLCKAMRDKYSVAVITNDIYTQEDALILARRQALSEDRIIGVETGGCPHTAIREDASINLQAVVEMTRRFPDLDVVFIESGGDNLAATFSPDLADLTLYVISVCQGEEIPRKGGPGITRSDFLVINKSDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG1_BRUME (Urease accessory protein ureG 1 OS=Brucella melitensis GN=ureG1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L   LCK +RDKYS+A +TNDI+T+ED   L R  AL E+RI  VETGGCPH AIRED SINL  + E++      D++  ESGGDNLAA FS +LAD  +Y+I V  G++IPRKGGPGIT++D LVINK+DLA
Sbjct:   10 VGIGGPVGSGKTTLTEKLCKAMRDKYSVAVITNDIYTQEDALILARRQALSEDRIIGVETGGCPHTAIREDASINLQAVVEMTRRFPDLDVVFIESGGDNLAATFSPDLADLTLYVISVCQGEEIPRKGGPGITRSDFLVINKSDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG1_BRUC2 (Urease accessory protein ureG 1 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L   LCK +RDKYS+A +TNDI+T+ED   L R  AL E+RI  VETGGCPH AIRED SINL  + E++      D++  ESGGDNLAA FS +LAD  +Y+I V  G++IPRKGGPGIT++D LVINK+DLA
Sbjct:   10 VGIGGPVGSGKTTLTEKLCKAMRDKYSVAVITNDIYTQEDALILARRQALSEDRIIGVETGGCPHTAIREDASINLQAVVEMTRRFPDLDVVFIESGGDNLAATFSPDLADLTLYVISVCQGEEIPRKGGPGITRSDFLVINKSDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG1_BRUAB (Urease accessory protein ureG 1 OS=Brucella abortus GN=ureG1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L   LCK +RDKYS+A +TNDI+T+ED   L R  AL E+RI  VETGGCPH AIRED SINL  + E++      D++  ESGGDNLAA FS +LAD  +Y+I V  G++IPRKGGPGIT++D LVINK+DLA
Sbjct:   10 VGIGGPVGSGKTTLTEKLCKAMRDKYSVAVITNDIYTQEDALILARRQALSEDRIIGVETGGCPHTAIREDASINLQAVVEMTRRFPDLDVVFIESGGDNLAATFSPDLADLTLYVISVCQGEEIPRKGGPGITRSDFLVINKSDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG1_BRUA2 (Urease accessory protein ureG 1 OS=Brucella abortus (strain 2308) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L   LCK +RDKYS+A +TNDI+T+ED   L R  AL E+RI  VETGGCPH AIRED SINL  + E++      D++  ESGGDNLAA FS +LAD  +Y+I V  G++IPRKGGPGIT++D LVINK+DLA
Sbjct:   10 VGIGGPVGSGKTTLTEKLCKAMRDKYSVAVITNDIYTQEDALILARRQALSEDRIIGVETGGCPHTAIREDASINLQAVVEMTRRFPDLDVVFIESGGDNLAATFSPDLADLTLYVISVCQGEEIPRKGGPGITRSDFLVINKSDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_RHOS1 (Urease accessory protein ureG OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=ureG PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.185e-45
Identity = 92/147 (62.59%), Postives = 106/147 (72.11%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG GKT L   LC  L  + S+A +TNDI+T+ED E LMR   LP ERIR VETGGCPH AIRED SINL  + +L       DL+L ESGGDNLAA FS ELAD  IY+ID + G  IPRK GPG+ ++DLLV+NKTDLA
Sbjct:    8 VGIGGPVGAGKTTLTEKLCAALAHRCSMAVITNDIYTREDAEALMRAQVLPAERIRGVETGGCPHTAIREDASINLAAVADLRRTFPDLDLILIESGGDNLAATFSPELADLTIYVIDTAAGQDIPRKRGPGLARSDLLVVNKTDLA 154          
The following BLAST results are available for this feature:
BLAST of FC923937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UREG_MESSB7.033e-4561.22Urease accessory protein ureG OS=Mesorhizobium sp.... [more]
UREG_BRUSI7.033e-4561.90Urease accessory protein ureG OS=Brucella suis (st... [more]
UREG_BACHD7.033e-4559.18Urease accessory protein ureG OS=Bacillus halodura... [more]
UREG_AGRRK7.033e-4563.95Urease accessory protein ureG OS=Agrobacterium rad... [more]
UREG1_BRUSU7.033e-4561.90Urease accessory protein ureG 1 OS=Brucella suis G... [more]
UREG1_BRUME7.033e-4561.90Urease accessory protein ureG 1 OS=Brucella melite... [more]
UREG1_BRUC27.033e-4561.90Urease accessory protein ureG 1 OS=Brucella canis ... [more]
UREG1_BRUAB7.033e-4561.90Urease accessory protein ureG 1 OS=Brucella abortu... [more]
UREG1_BRUA27.033e-4561.90Urease accessory protein ureG 1 OS=Brucella abortu... [more]
UREG_RHOS19.185e-4562.59Urease accessory protein ureG OS=Rhodobacter sphae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31710F10EF StrClemenN Citrus clementina cDNA clone C31710F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923937 ID=FC923937; Name=FC923937; organism=Citrus clementina; type=EST; length=618bp
ACCGATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGAAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGACTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGCTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGATCTTCTGGTGATA
AACAAAACTGACCTTGCT
back to top