FC923937

Overview
NameFC923937
Unique NameFC923937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG2_STRGG (Urease accessory protein ureG 2 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=ureG2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 77/156 (49.36%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  163 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN--GALPEERIRAVETGGCPHAAIREDISINLGP-LEELSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            ++    VGIGGPVG+GKTAL+ AL   L ++ +  A +TNDI+T+ED + + R   G L  ER+  VETG CPH A+R+D ++NL    E L      D LL ESGGDNL   FS  L D  ++++D + G+K+PRK GPGIT++DLLVINK D+A
Sbjct:   21 DDNVLRVGIGGPVGSGKTALIEALVPVLIERGHRPAVITNDIYTQEDAQHVRRTLAGVLEPERVVGVETGACPHTAVRDDPTMNLAAGAEMLERFPDTDTLLYESGGDNLTLTFSPALVDLFLFVLDTAEGEKMPRKRGPGITESDLLVINKIDIA 176          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_SULTO (Urease accessory protein ureG OS=Sulfolobus tokodaii GN=ureG PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.003e-32
Identity = 69/153 (45.10%), Postives = 99/153 (64.71%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFL--RDKYSLAAVTNDIFTKEDG-----EFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +G+ GPVG+GKT L+  L ++L  ++  S+  +TND+ +  D        +++   LP+E +  + TGGCPH AIRED S+NL  LE L      D++  ESGGDN+ + FS  LADY I+++D + GDK P KGG GI ++DLLV+NK DLA
Sbjct:    4 IGVLGPVGSGKTTLIEFLTEYLVKKEGLSVGIITNDVISSHDALRIYQNLVLKEKLLPKENVIGIVTGGCPHTAIREDPSVNLRALETLMKRTSLDVIFIESGGDNVMSTFSPILADYTIFVLDTAAGDKYPGKGGLGIQESDLLVVNKIDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_METS5 (Urease accessory protein ureG OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=ureG PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 73/152 (48.03%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN-----GALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGI GPVG+GKT+L+  L K   ++   +  +TND+ +  D   +  N       LP E +  + TGGCPH AIRED S+NL  LE L      DL+  ESGGDN+ + FS  LAD+ I+++D S GDK P KGG GIT++DLLV+NK DLA
Sbjct:    4 VGILGPVGSGKTSLIEFLAKEYSERGIKVGILTNDVVSAYDAMRIYHNLVERLRILPRENVLGLVTGGCPHTAIREDPSLNLRALETLEERANPDLVFIESGGDNVMSTFSSSLADFTIFVLDTSAGDKYPGKGGIGITESDLLVVNKIDLA 155          
The following BLAST results are available for this feature:
BLAST of FC923937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UREG2_STRGG1.470e-3449.36Urease accessory protein ureG 2 OS=Streptomyces gr... [more]
UREG_SULTO4.003e-3245.10Urease accessory protein ureG OS=Sulfolobus tokoda... [more]
UREG_METS51.521e-3148.03Urease accessory protein ureG OS=Metallosphaera se... [more]

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Properties
Property NameValue
Genbank descriptionC31710F10EF StrClemenN Citrus clementina cDNA clone C31710F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923937 ID=FC923937; Name=FC923937; organism=Citrus clementina; type=EST; length=618bp
ACCGATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGAAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGACTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGCTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGATCTTCTGGTGATA
AACAAAACTGACCTTGCT
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