FC923937

Overview
NameFC923937
Unique NameFC923937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PSEPF (Urease accessory protein ureG OS=Pseudomonas fluorescens (strain Pf0-1) GN=ureG PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.567e-51
Identity = 101/153 (66.01%), Postives = 121/153 (79.08%), Query Frame = 1
Query:  163 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            N +   VGIGGPVG+GKTAL LALC  LR++Y+LA VTNDI+T+ED +FL+RN AL  ERI  VETGGCPH AIRED SINL  +++L+      DL+L ESGGDNL+A FS EL+D  IY+IDVS GDK+PRKGGPGI ++DLLVINK DLA
Sbjct:    2 NTQPLRVGIGGPVGSGKTALTLALCLALRERYNLAVVTNDIYTREDADFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLDLILVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLA 154          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PSEF5 (Urease accessory protein ureG OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ureG PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.567e-51
Identity = 101/153 (66.01%), Postives = 121/153 (79.08%), Query Frame = 1
Query:  163 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            N +   VGIGGPVG+GKTAL LALC  LR++Y+LA VTNDI+T+ED +FL+RN AL  ERI  VETGGCPH AIRED SINL  +++L+      DL+L ESGGDNL+A FS EL+D  IY+IDVS GDK+PRKGGPGI ++DLLVINK DLA
Sbjct:    2 NAQPLRVGIGGPVGSGKTALTLALCLALRERYNLAVVTNDIYTREDADFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLDLILVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLA 154          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_AZOSB (Urease accessory protein ureG OS=Azoarcus sp. (strain BH72) GN=ureG PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.567e-51
Identity = 100/151 (66.23%), Postives = 120/151 (79.47%), Query Frame = 1
Query:  169 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +A  VGIGGPVG+GKTAL LALC+ LRDKY++A VTNDI+T ED +FL+RN AL  +RI  VETGGCPH AIRED SINL  ++ L+      +++  ESGGDNLAA FS EL+D  +Y+IDVS GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    5 QALRVGIGGPVGSGKTALTLALCRALRDKYNIAVVTNDIYTAEDAQFLVRNEALAPDRIIGVETGGCPHTAIREDASINLEAVDRLNQRFPGLEIIFVESGGDNLAATFSPELSDLTLYVIDVSAGDKIPRKGGPGITKSDLLVINKIDLA 155          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURP8 (Urease accessory protein ureG OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=ureG PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 8.577e-51
Identity = 102/162 (62.96%), Postives = 120/162 (74.07%), Query Frame = 1
Query:  136 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            AP  + R        VG+GGPVG+GKT L+  LCK +RDKY L A+TNDI+TKED   L   GALP ERI  VETGGCPH AIRED SINL  ++  L+    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:    3 APHTMHRTKKLPPLRVGVGGPVGSGKTTLLEMLCKAMRDKYDLVAITNDIYTKEDQRLLTVAGALPAERIMGVETGGCPHTAIREDASINLEAVDRMLTRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 164          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_STRAW (Urease accessory protein ureG OS=Streptomyces avermitilis GN=ureG PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 105/185 (56.76%), Postives = 130/185 (70.27%), Query Frame = 1
Query:   67 HSHDGLAPHSHEPIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            H+HDG +  S +  + PD                RA  +G+GGPVG+GKTA + ALC+ LRD +SLA VTNDI+T+ED EFL+R   LP ERI AVETG CPH AIR+DIS NL  +E+L + +   DL+L ESGGDNL A FS+ L D  I++IDV+GGD IPRKGGPG+T ADLLV+NKTDLA
Sbjct:    7 HTHDGPSAVSADA-HRPDG-------------TRRALRIGLGGPVGSGKTATVAALCRALRDAFSLAVVTNDIYTREDAEFLLREAVLPPERITAVETGACPHTAIRDDISANLEAVEDLEDEVGPLDLVLVESGGDNLTATFSKGLVDAQIFVIDVAGGDDIPRKGGPGVTTADLLVVNKTDLA 177          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_ALHEH (Urease accessory protein ureG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=ureG PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 99/150 (66.00%), Postives = 119/150 (79.33%), Query Frame = 1
Query:  172 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            A  VGIGGPVG+GKTAL+ ALCK LRD Y +A VTNDI+T+ED EFL RNGALP +RI  VETGGCPH AIRED S+NL  + +L+    + +++  ESGGDNL+A FS EL+D  +Y+IDV  GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    6 ALRVGIGGPVGSGKTALVEALCKALRDHYEIAVVTNDIYTREDAEFLTRNGALPADRIIGVETGGCPHTAIREDASMNLAAVGDLNQRFPELEVVFIESGGDNLSATFSPELSDLTLYVIDVCAGDKIPRKGGPGITRSDLLVINKIDLA 155          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG1_STRGG (Urease accessory protein ureG 1 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 96/151 (63.58%), Postives = 121/151 (80.13%), Query Frame = 1
Query:  169 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            RA  +G+GGPVG+GKTA + ALC+ LRD+ S+A VTNDI+T+ED +FL++N  LP ERI+AVETG CPH AIR+DIS NL  +E+L + +   DL+L ESGGDNL A FS+ L D  I++IDV+GGD IPRKGGPG+T ADLLV+NKTDLA
Sbjct:   34 RALRIGLGGPVGSGKTATVAALCRELRDRLSIAVVTNDIYTREDADFLLKNAVLPPERIQAVETGACPHTAIRDDISANLEAVEDLEDAVGPLDLILVESGGDNLTATFSKGLVDAQIFVIDVAGGDDIPRKGGPGVTTADLLVVNKTDLA 184          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_RALEJ (Urease accessory protein ureG OS=Ralstonia eutropha (strain JMP134) GN=ureG PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.463e-50
Identity = 99/147 (67.35%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VG+GGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L  +GALP ERI  VETGGCPH AIRED SINL  +E  L+    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:   14 VGVGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTISGALPAERIMGVETGGCPHTAIREDASINLEAVERMLAKFPDADVVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 160          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PSEAE (Urease accessory protein ureG OS=Pseudomonas aeruginosa GN=ureG PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.463e-50
Identity = 100/147 (68.03%), Postives = 120/147 (81.63%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTAL LALC+ LR++Y+LA VTNDI+T+ED EFL+RN AL  ERI  VETGGCPH AIRED SINL  +++L+      +L+L ESGGDNL+A FS EL+D  +Y+IDVS GDKIPRKGGPGI ++DLLVINK DLA
Sbjct:    8 VGIGGPVGSGKTALTLALCRELRERYNLAVVTNDIYTQEDAEFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLELILVESGGDNLSATFSPELSDLTLYVIDVSAGDKIPRKGGPGICKSDLLVINKIDLA 154          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PSEAB (Urease accessory protein ureG OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ureG PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.463e-50
Identity = 100/147 (68.03%), Postives = 120/147 (81.63%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTAL LALC+ LR++Y+LA VTNDI+T+ED EFL+RN AL  ERI  VETGGCPH AIRED SINL  +++L+      +L+L ESGGDNL+A FS EL+D  +Y+IDVS GDKIPRKGGPGI ++DLLVINK DLA
Sbjct:    8 VGIGGPVGSGKTALTLALCRELRERYNLAVVTNDIYTQEDAEFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLELILVESGGDNLSATFSPELSDLTLYVIDVSAGDKIPRKGGPGICKSDLLVINKIDLA 154          
The following BLAST results are available for this feature:
BLAST of FC923937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UREG_PSEPF6.567e-5166.01Urease accessory protein ureG OS=Pseudomonas fluor... [more]
UREG_PSEF56.567e-5166.01Urease accessory protein ureG OS=Pseudomonas fluor... [more]
UREG_AZOSB6.567e-5166.23Urease accessory protein ureG OS=Azoarcus sp. (str... [more]
UREG_BURP88.577e-5162.96Urease accessory protein ureG OS=Burkholderia phym... [more]
UREG_STRAW1.120e-5056.76Urease accessory protein ureG OS=Streptomyces aver... [more]
UREG_ALHEH1.120e-5066.00Urease accessory protein ureG OS=Alkalilimnicola e... [more]
UREG1_STRGG1.120e-5063.58Urease accessory protein ureG 1 OS=Streptomyces gr... [more]
UREG_RALEJ1.463e-5067.35Urease accessory protein ureG OS=Ralstonia eutroph... [more]
UREG_PSEAE1.463e-5068.03Urease accessory protein ureG OS=Pseudomonas aerug... [more]
UREG_PSEAB1.463e-5068.03Urease accessory protein ureG OS=Pseudomonas aerug... [more]

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Properties
Property NameValue
Genbank descriptionC31710F10EF StrClemenN Citrus clementina cDNA clone C31710F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923937 ID=FC923937; Name=FC923937; organism=Citrus clementina; type=EST; length=618bp
ACCGATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGAAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGACTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGCTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGATCTTCTGGTGATA
AACAAAACTGACCTTGCT
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