FC923937

Overview
NameFC923937
Unique NameFC923937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURM9 (Urease accessory protein ureG OS=Burkholderia mallei (strain NCTC 10229) GN=ureG PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.261e-50
Identity = 99/147 (67.35%), Postives = 116/147 (78.91%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPE RI  VETGGCPH AIRED SINL  +E  L+    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:   21 VGIGGPVGSGKTTLLEMLCKGMRERYDLVAITNDIYTKEDQRLLTIAGALPEARIMGVETGGCPHTAIREDASINLEAVERMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 167          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURM7 (Urease accessory protein ureG OS=Burkholderia mallei (strain NCTC 10247) GN=ureG PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.261e-50
Identity = 99/147 (67.35%), Postives = 116/147 (78.91%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPE RI  VETGGCPH AIRED SINL  +E  L+    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:   21 VGIGGPVGSGKTTLLEMLCKGMRERYDLVAITNDIYTKEDQRLLTIAGALPEARIMGVETGGCPHTAIREDASINLEAVERMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 167          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_SYNS3 (Urease accessory protein ureG OS=Synechococcus sp. (strain CC9311) GN=ureG PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.483e-50
Identity = 98/147 (66.67%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +G+ GPVG+GKTAL+ ALC+ LRD+  LA VTNDI+T+ED +FL R+GAL  ERIR VETGGCPH AIRED SIN   + EL +     DL++ ESGGDNLAA+FS EL D  IY+IDV+ GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    7 LGVAGPVGSGKTALVQALCRRLRDRLQLAVVTNDIYTQEDAQFLTRSGALEPERIRGVETGGCPHTAIREDCSINRAAVSELEHQFPGLDLVMVESGGDNLAASFSPELVDLCIYVIDVAAGDKIPRKGGPGITRSDLLVINKIDLA 153          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PROMM (Urease accessory protein ureG OS=Prochlorococcus marinus (strain MIT 9313) GN=ureG PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.239e-49
Identity = 99/147 (67.35%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELS-NLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +G+ GPVG+GKTAL+ A+C+ LRD+  LA VTNDI+T+ED EFL R GAL  ERIR VETGGCPH AIRED SIN   +E+L  N    D++L ESGGDNLAA+FS EL D  IY+IDV+ GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    7 LGVAGPVGSGKTALVEAMCRRLRDQLQLAVVTNDIYTQEDAEFLTRVGALEPERIRGVETGGCPHTAIREDCSINRAAVEDLERNFPDLDVVLVESGGDNLAASFSPELVDLCIYVIDVAAGDKIPRKGGPGITRSDLLVINKIDLA 153          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PROM3 (Urease accessory protein ureG OS=Prochlorococcus marinus (strain MIT 9303) GN=ureG PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.239e-49
Identity = 99/147 (67.35%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELS-NLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +G+ GPVG+GKTAL+ A+C+ LRD+  LA VTNDI+T+ED EFL R GAL  ERIR VETGGCPH AIRED SIN   +E+L  N    D++L ESGGDNLAA+FS EL D  IY+IDV+ GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    7 LGVAGPVGSGKTALVEAICRRLRDQLQLAVVTNDIYTQEDAEFLTRVGALEPERIRGVETGGCPHTAIREDCSINRAAVEDLERNFPDLDVVLVESGGDNLAASFSPELVDLCIYVIDVAAGDKIPRKGGPGITRSDLLVINKIDLA 153          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURXL (Urease accessory protein ureG OS=Burkholderia xenovorans (strain LB400) GN=ureG PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.618e-49
Identity = 102/175 (58.29%), Postives = 126/175 (72.00%), Query Frame = 1
Query:   97 HEPIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            H P +S    +++ PP+           VG+GGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALP ERI  VETGGCPH AIRED SINL  ++  L+    AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:    5 HHPAHST-VRTKKLPPL----------RVGVGGPVGSGKTTLLEMLCKAMREQYDLVAITNDIYTKEDQRLLTVAGALPAERIMGVETGGCPHTAIREDASINLEAVDRMLTRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 168          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BURP1 (Urease accessory protein ureG OS=Burkholderia pseudomallei (strain 1710b) GN=ureG PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.618e-49
Identity = 99/147 (67.35%), Postives = 115/147 (78.23%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPE RI  VETGGCPH AIRED SINL  +E  L     AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:   21 VGIGGPVGSGKTTLLEMLCKGMRERYDLVAITNDIYTKEDQRLLTIAGALPEARIMGVETGGCPHTAIREDASINLEAVERMLVRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLA 167          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_VARPS (Urease accessory protein ureG OS=Variovorax paradoxus (strain S110) GN=ureG PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.759e-49
Identity = 98/147 (66.67%), Postives = 114/147 (77.55%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L+  LCK +RDKY L A+TNDI+TKED   L   GALP ERI  VETGGCPH AIRED SINL  ++  L +   AD++  ESGGDNLAA FS EL+D  IY+IDV+ G+KIPRKGGPGIT++DL VINKTDLA
Sbjct:   20 VGIGGPVGSGKTTLLEMLCKAMRDKYDLVAITNDIYTKEDQRLLTVAGALPAERIMGVETGGCPHTAIREDASINLEAIDRMLEDFPDADVVFVESGGDNLAATFSPELSDLTIYVIDVAAGEKIPRKGGPGITKSDLFVINKTDLA 166          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_RHOP5 (Urease accessory protein ureG OS=Rhodopseudomonas palustris (strain BisA53) GN=ureG PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.759e-49
Identity = 98/147 (66.67%), Postives = 118/147 (80.27%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTALM  LCK LR++Y +AA+TNDI+TK D EFL+R+G+L  +RI  VETGGCPH AIRED S+NL  + ++ +     DL+L ESGGDNLAA FS ELAD  IY+IDV+ GDKIP KGGPGIT++DLLVINK DLA
Sbjct:   10 VGIGGPVGSGKTALMDLLCKELRERYQIAAITNDIYTKWDAEFLVRSGSLTPDRIVGVETGGCPHTAIREDASMNLAAVADMRAKFPDLDLVLIESGGDNLAATFSPELADLTIYVIDVAAGDKIPSKGGPGITRSDLLVINKIDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_NITOC (Urease accessory protein ureG OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=ureG PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.759e-49
Identity = 96/153 (62.75%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  163 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +++   VGIGGPVG+GKT L L+LC  LR++Y++A VTNDI+T+ED +FL+R+ AL +ERI  VETGGCPH AIRED SINL  + +LS      DL+L ESGGDNLAA FS EL+D  +Y+IDV+ G+KIPRKGGPGI ++DLL+INKTDLA
Sbjct:    2 SKQPLRVGIGGPVGSGKTTLTLSLCNALRNRYNVAVVTNDIYTEEDAQFLVRHQALAQERIIGVETGGCPHTAIREDASINLEAVAQLSQRFSDLDLILVESGGDNLAATFSPELSDLTLYVIDVAAGEKIPRKGGPGICKSDLLIINKTDLA 154          
The following BLAST results are available for this feature:
BLAST of FC923937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UREG_BURM97.261e-5067.35Urease accessory protein ureG OS=Burkholderia mall... [more]
UREG_BURM77.261e-5067.35Urease accessory protein ureG OS=Burkholderia mall... [more]
UREG_SYNS39.483e-5066.67Urease accessory protein ureG OS=Synechococcus sp.... [more]
UREG_PROMM1.239e-4967.35Urease accessory protein ureG OS=Prochlorococcus m... [more]
UREG_PROM31.239e-4967.35Urease accessory protein ureG OS=Prochlorococcus m... [more]
UREG_BURXL1.618e-4958.29Urease accessory protein ureG OS=Burkholderia xeno... [more]
UREG_BURP11.618e-4967.35Urease accessory protein ureG OS=Burkholderia pseu... [more]
UREG_VARPS2.759e-4966.67Urease accessory protein ureG OS=Variovorax parado... [more]
UREG_RHOP52.759e-4966.67Urease accessory protein ureG OS=Rhodopseudomonas ... [more]
UREG_NITOC2.759e-4962.75Urease accessory protein ureG OS=Nitrosococcus oce... [more]

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Properties
Property NameValue
Genbank descriptionC31710F10EF StrClemenN Citrus clementina cDNA clone C31710F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923937 ID=FC923937; Name=FC923937; organism=Citrus clementina; type=EST; length=618bp
ACCGATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGAAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGACTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGCTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGATCTTCTGGTGATA
AACAAAACTGACCTTGCT
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