FC923937

Overview
NameFC923937
Unique NameFC923937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_METFK (Urease accessory protein ureG OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=ureG PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.759e-49
Identity = 99/147 (67.35%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTAL LALC+ LR+ Y++A VTNDI+T+ED EFL RN AL  ERI  VETGGCPH AIRED S+NL  + +LS      D++  ESGGDNLAA FS EL+D  IY+IDV+ G+KIPRKGGPGIT++DLLVINK DLA
Sbjct:    9 VGIGGPVGSGKTALTLALCQRLRNVYNIAVVTNDIYTREDAEFLTRNEALAPERIIGVETGGCPHTAIREDASMNLEAVAQLSERFNPLDIVFVESGGDNLAATFSPELSDLTIYVIDVAAGEKIPRKGGPGITKSDLLVINKIDLA 155          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_STRCO (Urease accessory protein ureG OS=Streptomyces coelicolor GN=ureG PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.604e-49
Identity = 100/177 (56.50%), Postives = 126/177 (71.19%), Query Frame = 1
Query:   91 HSHEPIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            H HE   +    +RR       + + RA  +G+GGPVG+GKTA + ALC+ LR + SLA VTNDI+T+ED EFL+R   LP ERI AVETG CPH AIR+DIS NL  +E+L + +   DL+L ESGGDNL A FSR L D  +++IDV+GGD IPRKGGPG+  ADLL++NKTDLA
Sbjct:    5 HHHESAAAVSADARRP------DGSRRALRIGLGGPVGSGKTATVAALCRALRAELSLAVVTNDIYTREDAEFLLREAVLPPERITAVETGACPHTAIRDDISANLEAVEDLEDEVGPLDLVLVESGGDNLTATFSRGLVDAQVFVIDVAGGDDIPRKGGPGVATADLLIVNKTDLA 175          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_CITK8 (Urease accessory protein ureG OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ureG PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.604e-49
Identity = 99/147 (67.35%), Postives = 113/147 (76.87%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VG+GGPVG+GKTAL+ ALCK +RD Y LA VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS      DL+  ESGGDNL+A FS ELAD  IY+IDV+ G+KIPRKGGPGIT++D LVINKTDLA
Sbjct:   10 VGVGGPVGSGKTALLEALCKAMRDTYQLAVVTNDIYTKEDQRILTEAGALAPERIVGVETGGCPHTAIREDASMNLAAVEALSETFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_BRAJA (Urease accessory protein ureG OS=Bradyrhizobium japonicum GN=ureG PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.604e-49
Identity = 96/147 (65.31%), Postives = 118/147 (80.27%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VG+GGPVG+GKTALM  LCK +R++Y +AA+TNDI+TK D EFL+R+G+L  +RI  VETGGCPH AIRED S+NL  + ++ +     DL+L ESGGDNLAA FS ELAD  IY+IDV+ GDKIP KGGPGIT++DLLVINK DLA
Sbjct:   10 VGVGGPVGSGKTALMDLLCKTMRERYDIAAITNDIYTKWDAEFLVRSGSLTPDRIAGVETGGCPHTAIREDASMNLAAVADMRAKFPGLDLVLIESGGDNLAATFSPELADLTIYVIDVAAGDKIPSKGGPGITRSDLLVINKIDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_ALTMD (Urease accessory protein ureG OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=ureG PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.604e-49
Identity = 95/152 (62.50%), Postives = 119/152 (78.29%), Query Frame = 1
Query:  166 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            ++   +G+GGPVG+GKTAL+  LC  LRDKY++A VTNDI+T+ED EFL +N AL  +RI  VETGGCPH AIRED S+NL  ++EL +     D +L ESGGDNL+A FS EL+D  IY+IDVS GDKIPRKGGPGIT++DLL+INK D+A
Sbjct:    3 KQVLRIGVGGPVGSGKTALLRQLCLSLRDKYNMAVVTNDIYTREDAEFLTKNDALAADRIIGVETGGCPHTAIREDASMNLAAIDELQARHNDLDFVLVESGGDNLSATFSPELSDLTIYVIDVSAGDKIPRKGGPGITKSDLLIINKIDVA 154          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_SYNSC (Urease accessory protein ureG OS=Synechococcus sp. (strain CC9605) GN=ureG PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.707e-49
Identity = 99/147 (67.35%), Postives = 116/147 (78.91%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +G+ GPVG+GKTAL+ ALC+ LRD   LA VTNDI+T+ED +FL R GAL  ERIR VETGGCPH AIRED SIN   + EL +   + DL+L ESGGDNLAA+FS EL D  IY+IDV+ GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    7 LGVAGPVGSGKTALVEALCRRLRDDLQLAVVTNDIYTQEDAQFLTRAGALDPERIRGVETGGCPHTAIREDCSINRAAVAELEAQFPELDLVLVESGGDNLAASFSPELVDLCIYVIDVAAGDKIPRKGGPGITRSDLLVINKIDLA 153          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_DECAR (Urease accessory protein ureG OS=Dechloromonas aromatica (strain RCB) GN=ureG PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.707e-49
Identity = 98/153 (64.05%), Postives = 120/153 (78.43%), Query Frame = 1
Query:  163 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +++A  VGIGGPVG+GKTAL LALC+ LR++  +A VTNDI+T ED +FL+ + AL  ERI  VETGGCPH AIRED SINL  ++ L     A +L+L ESGGDNLAA FS EL+D  IY+IDV+ G+KIPRKGGPGIT++DLLVINK DLA
Sbjct:    2 SKQALRVGIGGPVGSGKTALTLALCQALREQIDMAVVTNDIYTAEDAKFLVNHSALAPERIIGVETGGCPHTAIREDASINLEAIDRLQRAFPAVELILVESGGDNLAATFSPELSDLTIYVIDVAAGEKIPRKGGPGITKSDLLVINKIDLA 154          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_HAHCH (Urease accessory protein ureG OS=Hahella chejuensis (strain KCTC 2396) GN=ureG PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.147e-49
Identity = 95/147 (64.63%), Postives = 121/147 (82.31%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTAL+  LC+ LR+++++A VTNDI+T+ED +FL+R+ AL E+RI  VETGGCPH AIRED S+NL  ++ L+      DL+L ESGGDNL+A FS EL+D  +Y+IDVS GDKIPRKGGPGIT++DLL+INKTDLA
Sbjct:    8 VGIGGPVGSGKTALVARLCQELRERFNIAVVTNDIYTEEDAQFLIRHQALTEDRIIGVETGGCPHTAIREDASMNLAAIDTLTARHPGLDLVLVESGGDNLSATFSPELSDLTLYVIDVSAGDKIPRKGGPGITKSDLLIINKTDLA 154          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_ENT38 (Urease accessory protein ureG OS=Enterobacter sp. (strain 638) GN=ureG PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.147e-49
Identity = 98/147 (66.67%), Postives = 114/147 (77.55%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VG+GGPVG+GKTAL+ ALCK +RD+Y LA VTNDI+TKED   L   GAL  +RI  VETGGCPH AIRED S+NL  +E LS      DL+  ESGGDNL+A FS ELAD  IY+IDV+ G+KIPRKGGPGIT++D LVINKTDLA
Sbjct:   10 VGVGGPVGSGKTALLEALCKAMRDQYQLAVVTNDIYTKEDQRILTEAGALEPDRIVGVETGGCPHTAIREDASMNLAAVETLSEKFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PSYIN (Urease accessory protein ureG OS=Psychromonas ingrahamii (strain 37) GN=ureG PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.028e-49
Identity = 94/147 (63.95%), Postives = 115/147 (78.23%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +G+GGPVG+GKTAL+  LC  LRDKY +A VTNDI+T ED +FL RN AL E+RI  VETGGCPH AIRED S+NL  +++L       D +L ESGGDNL+A FS EL+D  +Y+IDVS GDKIPRKGGPGIT++DLL+INK D+A
Sbjct:    9 IGVGGPVGSGKTALLSQLCLALRDKYDMAVVTNDIYTHEDAQFLTRNNALAEDRIIGVETGGCPHTAIREDASMNLAAIDDLHERHPNLDFVLVESGGDNLSATFSPELSDLTLYVIDVSAGDKIPRKGGPGITKSDLLIINKIDVA 155          
The following BLAST results are available for this feature:
BLAST of FC923937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UREG_METFK2.759e-4967.35Urease accessory protein ureG OS=Methylobacillus f... [more]
UREG_STRCO3.604e-4956.50Urease accessory protein ureG OS=Streptomyces coel... [more]
UREG_CITK83.604e-4967.35Urease accessory protein ureG OS=Citrobacter koser... [more]
UREG_BRAJA3.604e-4965.31Urease accessory protein ureG OS=Bradyrhizobium ja... [more]
UREG_ALTMD3.604e-4962.50Urease accessory protein ureG OS=Alteromonas macle... [more]
UREG_SYNSC4.707e-4967.35Urease accessory protein ureG OS=Synechococcus sp.... [more]
UREG_DECAR4.707e-4964.05Urease accessory protein ureG OS=Dechloromonas aro... [more]
UREG_HAHCH6.147e-4964.63Urease accessory protein ureG OS=Hahella chejuensi... [more]
UREG_ENT386.147e-4966.67Urease accessory protein ureG OS=Enterobacter sp. ... [more]
UREG_PSYIN8.028e-4963.95Urease accessory protein ureG OS=Psychromonas ingr... [more]

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Properties
Property NameValue
Genbank descriptionC31710F10EF StrClemenN Citrus clementina cDNA clone C31710F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923937 ID=FC923937; Name=FC923937; organism=Citrus clementina; type=EST; length=618bp
ACCGATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGAAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGACTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGCTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGATCTTCTGGTGATA
AACAAAACTGACCTTGCT
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