FC923937

Overview
NameFC923937
Unique NameFC923937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_SYNY3 (Urease accessory protein ureG OS=Synechocystis sp. (strain PCC 6803) GN=ureG PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.369e-48
Identity = 95/147 (64.63%), Postives = 115/147 (78.23%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +GI GPVG+GKTAL+ ALCK LR KY LA VTNDI+T+ED +FL+R  AL  +RI  VETGGCPH AIRED S+NL  + +L +  +  D++  ESGGDNLAA FS EL D  +Y+IDV+ GDKIPRKGGPGIT++DLLVINK DLA
Sbjct:    8 IGIAGPVGSGKTALLEALCKALRQKYQLAVVTNDIYTQEDAQFLVRAEALTPDRILGVETGGCPHTAIREDASLNLAAIADLEARFMPLDMVFLESGGDNLAATFSPELVDLTLYVIDVAAGDKIPRKGGPGITKSDLLVINKIDLA 154          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_RHOFD (Urease accessory protein ureG OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=ureG PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.369e-48
Identity = 95/147 (64.63%), Postives = 115/147 (78.23%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE-LSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L  +GALP +RI  VETGGCPH AIRED SINL  ++  L +   AD++  ESGGDNLAA FS EL+D  IY+IDV+ G+KIPRKGGPGIT++DL VINKTDLA
Sbjct:   20 VGIGGPVGSGKTTLLEMLCKGMRERYDLVAITNDIYTKEDQRLLTESGALPADRIMGVETGGCPHTAIREDASINLEAIDRMLVDFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAAGEKIPRKGGPGITKSDLFVINKTDLA 166          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_MYCA9 (Urease accessory protein ureG OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ureG PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.369e-48
Identity = 94/147 (63.95%), Postives = 118/147 (80.27%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            +GIGGPVG+GKTAL+ ALC+ LRD+ S+A +TNDI+T ED +FL R+  LP+ERI AV+TGGCPH AIR+DI+ NL  +E+L +     DL+L ESGGDNL A FS  L D  I++IDV+GGDK+PRKGGPG+T +DLLVINKTDLA
Sbjct:   29 IGIGGPVGSGKTALVAALCRTLRDEISVAVLTNDIYTTEDADFLRRHAVLPDERITAVQTGGCPHTAIRDDITANLDAIEDLIATNEPLDLILVESGGDNLTATFSSGLIDVQIFVIDVAGGDKVPRKGGPGVTFSDLLVINKTDLA 175          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_KLEP7 (Urease accessory protein ureG OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ureG PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.369e-48
Identity = 99/155 (63.87%), Postives = 115/155 (74.19%), Query Frame = 1
Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS      DL+  ESGGDNL+A FS ELAD  IY+IDV+ G+KIPRKGGPGIT++D LVINKTDLA
Sbjct:    2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAPERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_KLEP3 (Urease accessory protein ureG OS=Klebsiella pneumoniae (strain 342) GN=ureG PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.369e-48
Identity = 99/155 (63.87%), Postives = 115/155 (74.19%), Query Frame = 1
Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS      DL+  ESGGDNL+A FS ELAD  IY+IDV+ G+KIPRKGGPGIT++D LVINKTDLA
Sbjct:    2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAPERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_KLEAE (Urease accessory protein ureG OS=Klebsiella aerogenes GN=ureG PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.369e-48
Identity = 99/155 (63.87%), Postives = 115/155 (74.19%), Query Frame = 1
Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS      DL+  ESGGDNL+A FS ELAD  IY+IDV+ G+KIPRKGGPGIT++D LVINKTDLA
Sbjct:    2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAPERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_SINMW (Urease accessory protein ureG OS=Sinorhizobium medicae (strain WSM419) GN=ureG PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.788e-48
Identity = 99/147 (67.35%), Postives = 116/147 (78.91%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTAL   LCK +R++YSLA VTNDI+TKED E L+R  ALP ERI  VETGGCPH AIRED SINL  + +L+  L + DL+  ESGGDNLAA FS +LAD  IY+I V  G++IPRKGGPGIT++DLLVINK DLA
Sbjct:   10 VGIGGPVGSGKTALTEKLCKAMRERYSLAVVTNDIYTKEDAEALVRMQALPSERIVGVETGGCPHTAIREDASINLQAIADLNRRLPELDLVFIESGGDNLAATFSPDLADLTIYVISVCQGEEIPRKGGPGITKSDLLVINKKDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_MYCTU (Urease accessory protein ureG OS=Mycobacterium tuberculosis GN=ureG PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.788e-48
Identity = 100/185 (54.05%), Postives = 127/185 (68.65%), Query Frame = 1
Query:   67 HSHDGLAPHSHEPIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            HSH    PHSH     P    +   P+           +G+GGPVG+GKTAL+ ALC+ LR + SLA +TNDI+T ED +FL  +  LP++RI AV+TGGCPH AIR+DI+ NL  ++EL     A DL+L ESGGDNL A FS  L D  I++IDV+GGDK+PRKGGPG+T +DLLV+NKTDLA
Sbjct:    4 HSH----PHSHTVPARPRRVRKPGEPL----------RIGVGGPVGSGKTALVAALCRQLRGELSLAVLTNDIYTTEDADFLRTHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDELMAAHDALDLILVESGGDNLTATFSSGLVDAQIFVIDVAGGDKVPRKGGPGVTYSDLLVVNKTDLA 174          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_MYCTA (Urease accessory protein ureG OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ureG PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.788e-48
Identity = 100/185 (54.05%), Postives = 127/185 (68.65%), Query Frame = 1
Query:   67 HSHDGLAPHSHEPIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            HSH    PHSH     P    +   P+           +G+GGPVG+GKTAL+ ALC+ LR + SLA +TNDI+T ED +FL  +  LP++RI AV+TGGCPH AIR+DI+ NL  ++EL     A DL+L ESGGDNL A FS  L D  I++IDV+GGDK+PRKGGPG+T +DLLV+NKTDLA
Sbjct:    4 HSH----PHSHTVPARPRRVRKPGEPL----------RIGVGGPVGSGKTALVAALCRQLRGELSLAVLTNDIYTTEDADFLRTHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDELMAAHDALDLILVESGGDNLTATFSSGLVDAQIFVIDVAGGDKVPRKGGPGVTYSDLLVVNKTDLA 174          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_MYCBT (Urease accessory protein ureG OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ureG PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.788e-48
Identity = 100/185 (54.05%), Postives = 127/185 (68.65%), Query Frame = 1
Query:   67 HSHDGLAPHSHEPIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            HSH    PHSH     P    +   P+           +G+GGPVG+GKTAL+ ALC+ LR + SLA +TNDI+T ED +FL  +  LP++RI AV+TGGCPH AIR+DI+ NL  ++EL     A DL+L ESGGDNL A FS  L D  I++IDV+GGDK+PRKGGPG+T +DLLV+NKTDLA
Sbjct:    4 HSH----PHSHTVPARPRRVRKPGEPL----------RIGVGGPVGSGKTALVAALCRQLRGELSLAVLTNDIYTTEDADFLRTHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDELMAAHDALDLILVESGGDNLTATFSSGLVDAQIFVIDVAGGDKVPRKGGPGVTYSDLLVVNKTDLA 174          
The following BLAST results are available for this feature:
BLAST of FC923937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UREG_SYNY31.369e-4864.63Urease accessory protein ureG OS=Synechocystis sp.... [more]
UREG_RHOFD1.369e-4864.63Urease accessory protein ureG OS=Rhodoferax ferrir... [more]
UREG_MYCA91.369e-4863.95Urease accessory protein ureG OS=Mycobacterium abs... [more]
UREG_KLEP71.369e-4863.87Urease accessory protein ureG OS=Klebsiella pneumo... [more]
UREG_KLEP31.369e-4863.87Urease accessory protein ureG OS=Klebsiella pneumo... [more]
UREG_KLEAE1.369e-4863.87Urease accessory protein ureG OS=Klebsiella aeroge... [more]
UREG_SINMW1.788e-4867.35Urease accessory protein ureG OS=Sinorhizobium med... [more]
UREG_MYCTU1.788e-4854.05Urease accessory protein ureG OS=Mycobacterium tub... [more]
UREG_MYCTA1.788e-4854.05Urease accessory protein ureG OS=Mycobacterium tub... [more]
UREG_MYCBT1.788e-4854.05Urease accessory protein ureG OS=Mycobacterium bov... [more]

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Properties
Property NameValue
Genbank descriptionC31710F10EF StrClemenN Citrus clementina cDNA clone C31710F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923937 ID=FC923937; Name=FC923937; organism=Citrus clementina; type=EST; length=618bp
ACCGATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGAAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGACTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGCTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGATCTTCTGGTGATA
AACAAAACTGACCTTGCT
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