FC923946

Overview
NameFC923946
Unique NameFC923946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923946_ssr2 microsatellite FC923946_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15458 contig Ccv1_Contig15458:308..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 50/135 (37.04%), Postives = 82/135 (60.74%), Query Frame = 1
Query:  298 GLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILSHSSDLGR-GGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            G   +G++   GK +  MED++  +   + G  +GLF ++DGH G     +++++LF+N++K  + + D + +I++ Y  TD  +L   +   R  GSTA TAIL+ G RL VANVGDSRAV+   G A+ ++ D
Sbjct:   61 GKFSYGYASSPGKRSS-MEDFYDTRIDGVDGETVGLFGVFDGHGGARAAEFVKQNLFTNLIKHPKLFSDTKSAIAETYTSTDSELLKAETSHNRDAGSTASTAILV-GDRLLVANVGDSRAVICRGGDAIAVSRD 193          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C11_ARATH (Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1
Query:  310 FGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRA-ILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            +G+S +KGK    MEDY   +   + G  +  F ++DGH G     YL+ +LF N++  ++F  D +++I + +++TD   ++  +      GSTA TA LI G +L VANVGDSR V S  G AV ++ D
Sbjct:  124 YGYSSLKGK-RATMEDYFETRISDVNGQMVAFFGVFDGHGGARTAEYLKNNLFKNLVSHDDFISDTKKAIVEVFKQTDEEYLIEEAGQPKNAGSTAATAFLI-GDKLIVANVGDSRVVASRNGSAVPLSDD 252          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C56_ORYSJ (Probable protein phosphatase 2C 56 OS=Oryza sativa subsp. japonica GN=Os06g0526800/Os06g0526950 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 53/136 (38.97%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  298 GLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILS--HSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            G + + +S  KG+    MED    K   +    + LF ++DGH G     YL++HLF N++   E   D + +IS+ + KTD   L    S+     GSTAVTAIL+ G  L+V NVGDSR V   AG AV ++ D
Sbjct:   93 GRLSWDYSSFKGR-RPSMEDRFSIKMTTINEQTVSLFGVFDGHGGSLAAEYLKEHLFENLVNHPELLRDTKLAISQTFLKTDADFLESVSSNPFRDDGSTAVTAILV-GNHLYVGNVGDSRVVALKAGKAVPLSED 226          
The following BLAST results are available for this feature:
BLAST of FC923946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
P2C59_ORYSJ7.253e-1837.04Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C11_ARATH4.701e-1737.40Probable protein phosphatase 2C 11 OS=Arabidopsis ... [more]
P2C56_ORYSJ3.047e-1638.97Probable protein phosphatase 2C 56 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC31710G11EF StrClemenN Citrus clementina cDNA clone C31710G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923946 ID=FC923946; Name=FC923946; organism=Citrus clementina; type=EST; length=706bp
GGAAGAAGAAGAACATCAAAAACCCCCCACGGAACAAAGATCACCAACAA
GGAGCATCAGTTGATTTTTAGCTTTGAATTGATCAACGAGAGATTGAGAA
TTCTGGGAGCTGGGCTTGATTTAAAATTTTGGAGTAGAGTTGTTTACCAA
GAGTTTGATGTTGAAATTTTAGTTGAATTAGTTGGAACTGCTTTGCTGAA
TTTTTATTTTATGGATAGCTTATGCTGCTTTAATGCTTCGTACTCGAAGC
TTGTGGGAGGACGCTCGTCATCTACTGGTAAGGGGAGAAGCAATGTTGGA
TTAGTCAAGTTTGGTTTCAGCTTGGTAAAAGGGAAAGCTAATCATCCCAT
GGAGGATTATCATGTTGCAAAATTTGTACAACTTCAAGGTCATGAATTAG
GGTTGTTTGCTATTTATGACGGCCATTTGGGAGAAACTGTGCCTGCCTAC
CTACAAAAGCATTTGTTTTCCAACATCCTAAAGGAGGAAGAGTTTTGGGT
TGACCCCCAGAGATCTATCTCTAAAGCTTATGAGAAGACAGACCGAGCAA
TTCTCTCACACAGCTCTGACTTGGGCCGGGGTGGATCCACTGCTGTTACT
GCAATTTTGATAAATGGTCAAAGGTTATGGGTAGCCAACGTTGGAGATTC
TCGAGCAGTTCTTTCAACGGCTGGCGTTGCAGTACAGATGACTATAGACA
TGAGCC
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