FC923953

Overview
NameFC923953
Unique NameFC923953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCGJ_DICDI (ABC transporter G family member 19 OS=Dictyostelium discoideum GN=abcG19 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 43/198 (21.72%), Postives = 97/198 (48.99%), Query Frame = 2
Query:   59 RFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSA---IPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDI 643
            R+L   T +  +G +F++     +    L    G ++SV LF    NA+     +P+   +R +  ++ +  M+   +  + Q+  +I     Q  ++ +++Y M G +++ GKFF+F + +  + +  T    M    +P   ++  V++ F+     + G+ IP+ ++  W+ W+YW +P ++    L+  + GD+
Sbjct:  497 RYLSVFTQSFVYGSIFYNL---ETNINGLFTRGGTLFSVILF----NALLCECEMPLTFGQRGILQKQHSYAMYRPSALHIAQIVTDIPLTIIQVFLFSIVVYFMFGLQYDAGKFFIFCFTLVGATLATTNLFRMFGNFSPSLYISQNVMNIFIISMITYTGYTIPKPKMHPWFSWFYWCNPFSYAFKALMANEFGDL 687          

HSP 2 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 48/202 (23.76%), Postives = 90/202 (44.55%), Query Frame = 2
Query:   29 YWRNPQYNAIRFLMTATIAIFFGLLFWD-KGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTL-YGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWR-WYYWLSPVAWNLYGLVT 625
            +WR+P Y    F+  +   +  G  FW  KG  S   Q +  +        L LG       +P   +++  + R+ A+  +S   +A+  VAVEI  V      +    +   G   +  +   +F+F+   +++F + +G  + A++    +A  ++   +    LF G M+    IP +WR W Y L+P  + + G+VT
Sbjct: 1147 WWRDPFYTYGSFIQASMAGLIMGFTFWSLKGSSSDMSQRVFFIFET-----LILGILLIFVVLPQFIMQQEYFKRDFASKFYSWFPFAISIVAVEIPIVIISGTFFFFCSFWTAGLYTKFNEINFYFWFILILYLLFCVSFGQAVSAISFNLFLAHTLIPLLIVFLFLFCGVMVIPSSIPTFWRGWVYHLNPCRYFMEGIVT 1343          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCGE_DICDI (ABC transporter G family member 14 OS=Dictyostelium discoideum GN=abcG14 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 50/203 (24.63%), Postives = 93/203 (45.81%), Query Frame = 2
Query:   29 YWRNPQYNAIRFLMTATIAIFFGLLFWD-KGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGF-KWELGKFFLFFYFMWASFVIFTL-YGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWR-WYYWLSPVAWNLYGLVT 625
            +WR+P Y    F+ +A   +  G  FW+ +G  S   Q +  +  A     L LG       +P +  +R  + R+ A+  +S   +A+  V VE+ ++     ++    +   G  K    +   +F+F++  F+ F + +G  + A+      A  ++   +    LF+G M P   IP +WR W Y L+P  + + G+VT
Sbjct: 1136 WWRDPYYTYGSFVQSALCGLIIGFTFWNLQGSSSDMNQRIFFIFEA-----LMLGILLIFVVMPQLISQREYFKRDFASKFYSWFPFAISIVVVELPFIVISGTIFFFCSFWTAGLDKTSDSEQTFYFWFIFVIFLFFCVSFGQAVAAVCINMFFAMTLIPLLIVFLFLFSGVMTPPSSIPTFWRGWVYHLNPCRYFMEGIVT 1333          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCG3_DICDI (ABC transporter G family member 3 OS=Dictyostelium discoideum GN=abcG3 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 63/221 (28.51%), Postives = 103/221 (46.61%), Query Frame = 2
Query:    5 SFWKQYW-SYWRNPQYNAIRFLMTATIAIFFGLLFW--DKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKF-FLFFYFMWASFVIFTLYGMM--IVALT-PGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIE 646
            S  K+ W ++ R PQ   +RFL +   AI  G LF   D  Q  +R +     LG ++      G   ++  +P I  +R+VYYRE +AG + A  Y L  V  ++  +      Y + ++ + G    LG   + FF+ +    ++   Y  +  + ALT P   +A +V    L    LF GF IP   IP  W W ++L    ++ YGL T  + +++
Sbjct: 1107 SLVKRGWLNHVRRPQTILLRFLRSFIPAIVIGTLFLRLDNDQTGARNRIALVFLGFLF------GGMASIGKVPTIVEDRSVYYRESSAGTYPAHLYILASVITDLPMMVLTAFSYWIPMFFLTGL--TLGDHGWKFFFSLSVYLLVIMCYDSLATLFALTLPTIPIAILVSGVGLNFLGLFGGFFIPVNNIPRGWIWMHYL---VFSKYGLETLSITELK 1316          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 53/212 (25.00%), Postives = 88/212 (41.51%), Query Frame = 2
Query:    8 FWKQYWSY----W----RNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGL 619
            +W+Q++      W    R+   N +R  M+   A+ FG +FW  G+  +  QD   LL            T  V   P    ER +  RER+ G +S   Y L +   EI    A  +M+  +LY M      L +F  F   +       +  G+ + A+ P  + A  V    + ++ +F G+ +  +  P+ +RW    S + W   GL
Sbjct:  390 WWRQFFLLLKRAWMQASRDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPK---ERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRASLIRWAFQGL 598          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: WHITE_CERCA (Protein white OS=Ceratitis capitata GN=W PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 52/215 (24.19%), Postives = 97/215 (45.12%), Query Frame = 2
Query:    2 ASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIE 646
            A  W+ + S  + P    +R L T  +A+  GL+F   GQ+ + Q  + N+ GA++     +   N+ + I V   E  V+ RE  + ++   +Y LG+   E+        ++  I Y +IG +  +  FF     +     + T +G +I        +A  V    +  + LF GF +    +PV+++W  +LS   +   GL+  Q  D++
Sbjct:  407 AVLWRSWLSVLKEPLLVKVRLLQTTMVAVLIGLIFL--GQQLT-QVGVMNINGAIFLFLTNMTFQNSFATITVFTTELPVFMRETRSRLYRCDTYFLGKTIAELPLFLVVPFLFTAIAYPLIGLRPGVDHFFTALALVTLVANVSTSFGYLISCACSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYFKWLSYLSWFRYANEGLLINQWADVK 618          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: WHITE_DROME (Protein white OS=Drosophila melanogaster GN=w PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 54/215 (25.12%), Postives = 97/215 (45.12%), Query Frame = 2
Query:    2 ASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIE 646
            A  W+ + S  + P    +R + T  +AI  GL+F   GQ+ + Q  + N+ GA++     +   N  + I V   E  V+ RE  + ++   +Y LG+   E+       +++  I Y MIG +  +  FF     +     + T +G +I   +    +A  V    +  + LF GF +    +PV+ +W  +LS   +   GL+  Q  D+E
Sbjct:  415 AVLWRSWLSVLKEPLLVKVRLIQTTMVAILIGLIFL--GQQLT-QVGVMNINGAIFLFLTNMTFQNVFATINVFTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGYLISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYLKWLSYLSWFRYANEGLLINQWADVE 626          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCG9_DICDI (ABC transporter G family member 9 OS=Dictyostelium discoideum GN=abcG9 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 51/228 (22.37%), Postives = 107/228 (46.93%), Query Frame = 2
Query:   59 RFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLL---GAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFM----WASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIETLVQ---IPDGTS*Q*SICQDNTIQ 712
            R+L     +  +G +F++       Q +L  L    GA+++  LF    +           R +  ++++  M+   ++ + QV  +I   T Q  ++ +++Y M G ++E GKFF+F + +     A+  +F  +G +  +L   Q V T +L F ++    + G+ IP+ ++  W+ W++W +P  +    L+  +  D+    +   IP GT        DN+++
Sbjct:  499 RYLSVIIQSFVYGSVFYNM------QTNLSGLFTRGGAIFAAILFNAFLSEGELFATF-YGRRILQKQQSYAMYRPSAFHIAQVVTDIPLTTVQVFLFSIVVYFMFGLQYEAGKFFIFCFTLIGATLATTNMFRAFGNLSPSLYVSQNVMTGILIFMIS----YCGYSIPKNKMHPWFGWFFWANPFTYAFKALMANEFMDLNFSCETEAIPYGTDPTTGAPYDNSVR 715          

HSP 2 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 57/220 (25.91%), Postives = 93/220 (42.27%), Query Frame = 2
Query:    5 SFWKQYWS--------YWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLY----GMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWR-WYYWLSPVAWNLYGLVT 625
            S W Q W         Y+R+P Y     L      I  G  FWD    SS   D+   +  ++   L LG       +    V++  + R+ A+  +S   +A+  V VEI Y      ++    +   G   E G+    FYF W  F+I+  +    G  I A+     +A  ++   +    LF G M+P  +IP +W+ W Y L+P  + + G++T
Sbjct: 1136 SIWYQTWEVYKRMNVIYFRDPFYAYGSILQAVMTGIIVGFTFWDLKDSSS---DMNQRIFFIFQA-LLLGILLIFVVMVQFLVQKEYFKRDYASKFYSWFPFAISIVLVEIPYTIVCGSVFFFCSFWTAGLFME-GQNGANFYF-WIIFIIYLFFCVSFGGAIAAVCNHMFLAMTLVPLLIVFLFLFCGVMVPPSQIPTFWKGWVYHLNPCRYFMEGIIT 1349          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 53/205 (25.85%), Postives = 93/205 (45.37%), Query Frame = 2
Query:    8 FWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLV 622
            F + + S  R+     +RF+    I +  GLL+   G  +S+   + N  G ++   LFL     +  +    +E  V+ RE     +S  +Y L +   ++ +     V+Y  I+Y M G   E  +F LF     A+ ++    G++I A +   QVAT V         LF+GF +  + IP + +W  +LS V +   G++
Sbjct:  378 FKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLYLHIGDDASK---VFNNTGCLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGVI 579          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: AB20G_ARATH (ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 52/207 (25.12%), Postives = 90/207 (43.48%), Query Frame = 2
Query:   35 RNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYF-----MWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGD 640
            R P+   IR        +    +FW   +  +  + +Q  LG  ++  +         AIPV   ER ++ RE A   +   SY L    + I  +   +  +    +S +G      + FLFF+F      WA     T    ++  +  G  V   +L++FL    LF+GF I R+ IP++W W+++LS V +   G++  +  D
Sbjct:  448 RQPELFGIRLGAVLVTGMILATIFW---KLDNSPRGIQERLG-FFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHTIISIPALIILSAAFAASTFSAVGLAGG-SEGFLFFFFTILTAFWAGSSFVTFLSGVVSHVMIGFTVVVAILAYFL----LFSGFFISRDRIPLYWIWFHYLSLVKYPYEGVLQNEFED 645          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 46/196 (23.47%), Postives = 81/196 (41.33%), Query Frame = 2
Query:   35 RNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLV 622
            R P+   +R        I    +F +        Q+         S   +        AIPV   ER ++ RE A   +   SY L Q  + I  +   +  +    +  +G       FF F++ + ASF   + +   +  + P   +   V+   LA + LF+GF I R+ IPV+W W++++S V +   G++
Sbjct:  464 RQPELLGMRLGAVMVTGIILATMFTNLDNSPKGAQERLGFFAFAMSTTFY----TCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSQSIISIPALIVLSASFAATTFWAVGLDGGANGFFFFYFTILASFWAGSSFVTFLSGVIPNVMLGFTVVVAILAYFLLFSGFFISRDRIPVYWLWFHYISLVKYPYEGVL 655          
The following BLAST results are available for this feature:
BLAST of FC923953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ABCGJ_DICDI5.043e-1421.72ABC transporter G family member 19 OS=Dictyosteliu... [more]
ABCGE_DICDI1.123e-1324.63ABC transporter G family member 14 OS=Dictyosteliu... [more]
ABCG3_DICDI1.123e-1328.51ABC transporter G family member 3 OS=Dictyostelium... [more]
AB7G_ARATH2.503e-1325.00ABC transporter G family member 7 OS=Arabidopsis t... [more]
WHITE_CERCA3.269e-1324.19Protein white OS=Ceratitis capitata GN=W PE=2 SV=1[more]
WHITE_DROME5.576e-1325.12Protein white OS=Drosophila melanogaster GN=w PE=1... [more]
ABCG9_DICDI5.576e-1322.37ABC transporter G family member 9 OS=Dictyostelium... [more]
ABCG4_HUMAN5.576e-1325.85ATP-binding cassette sub-family G member 4 OS=Homo... [more]
AB20G_ARATH7.282e-1325.12ABC transporter G family member 20 OS=Arabidopsis ... [more]
AB2G_ARATH9.511e-1323.47ABC transporter G family member 2 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31710H10EF StrClemenN Citrus clementina cDNA clone C31710H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923953 ID=FC923953; Name=FC923953; organism=Citrus clementina; type=EST; length=724bp
GGCTTCTTTCTGGAAACAGTATTGGTCTTACTGGAGAAATCCTCAATACA
ATGCTATTCGATTTCTCATGACTGCCACCATCGCCATTTTCTTCGGTCTT
CTCTTCTGGGACAAAGGACAGAAGAGTTCCAGACAACAGGATCTACAGAA
TCTTTTAGGAGCTATGTATTCGGTTTGTCTTTTCCTTGGGACCACCAATG
CCGTGTCTGCGATACCTGTTATCTGTGTTGAGAGAACGGTATACTACCGT
GAAAGAGCAGCCGGGATGTTTTCTGCATTGTCTTATGCACTTGGTCAAGT
TGCAGTAGAGATAATATATGTGACAGCTCAAACTGTCATGTATGTTCTTA
TCCTTTACTCGATGATAGGATTCAAGTGGGAGCTGGGAAAATTCTTCTTG
TTCTTCTACTTCATGTGGGCGTCTTTTGTCATTTTCACATTGTACGGAAT
GATGATTGTCGCATTGACTCCTGGCCAGCAAGTTGCTACCATTGTCTTGT
CCTTCTTCCTTGCACTATGGAACTTGTTCGCCGGTTTCATGATTCCCAGA
GAGGAAATTCCTGTCTGGTGGAGGTGGTACTACTGGCTTTCTCCGGTGGC
TTGGAATCTGTATGGCCTTGTGACTTGTCAAGTTGGTGACATAGAGACAC
TGGTGCAGATCCCTGATGGCACTTCATGACAGTGAAGCATTTGTCAAGAT
AATACGATACAGACTANTTCCTTC
back to top