FC923953

Overview
NameFC923953
Unique NameFC923953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: AB10G_ARATH (ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 43/187 (22.99%), Postives = 85/187 (45.45%), Query Frame = 2
Query:   32 WRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLS 592
            +R  Q    R L  +   +  G ++ + G +    + L+    A     L   TT     +P+   +R +  RE +   +  LSY L    + I ++   ++++   +Y ++G + EL  F  F   +W   ++   +     AL P   + T V+S  +  + LF+G+ I ++ IPV+W + ++LS
Sbjct:  346 FRTKQLFTTRALQASIAGLILGSIYLNVGNQKKEAKVLRTGFFAFILTFLLSSTTEG---LPIFLQDRRILMRETSRRAYRVLSYVLADTLIFIPFLLIISMLFATPVYWLVGLRRELDGFLYFSLVIWIVLLMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFIAKDRIPVYWEFMHYLS 529          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: CDR3_CANAL (Opaque-specific ABC transporter CDR3 OS=Candida albicans GN=CDR3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 58/229 (25.33%), Postives = 106/229 (46.29%), Query Frame = 2
Query:    2 ASFWKQY--------WSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYY-RERAAGMFSALSYALGQVAVEIIY-VTAQTVMYVLILYSMIGFKWEL------GKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGD 640
            ASFWKQY          YWR P Y   +F M    ++F G  ++ K Q S   Q L+N + +++S+ + L TT A   +P+   +R +Y  RER +  FS L++   Q+  EI Y V A T+ +    Y +  ++  +       +  L +  M   F+  +      ++       A   +S  L +  +F G +  ++ +P +W + Y  +P+ +    +++  +GD
Sbjct: 1153 ASFWKQYIFVVHRLFQQYWRTPSYIYSKFAMAVLCSLFNGFTYY-KSQNS--MQGLKNQMLSIFSMFVVL-TTLAQQYVPLFVTQRDLYEARERPSKTFSWLAFIAAQITAEIPYQVLAATISFFSWYYPVGLYRNAVYSGAVTHRGVLMWLIMTLMFIYSSTLAQFCISWNQLADYAANWISLLLTISMIFCGVIATKDSMPKFWVFLYRCTPLTYLTSAMMSIGLGD 1377          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 52/211 (24.64%), Postives = 99/211 (46.92%), Query Frame = 2
Query:    5 SFWKQYW--------SYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTA-QTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNL 610
            SFW Q++        +Y RNP      + +   + +  G LFW     ++ +   QN  GAM+ +   L +  +++++ +   +R ++ RERA G +   +Y L +V  +II +     ++   I Y MIG +  +  F  F   +  +  + +   M I  ++P    A +V    L ++ LF GF++ R  IP +     W+S +++ L
Sbjct:  881 SFWTQFFVVCRRSLLNYMRNPFLLRTTYFVHIFVGLTLGYLFWKL--PANLEPGCQNRFGAMFFMTALL-SFGSITSLDLFYNDRIIFIRERANGFYRTSAYFLAKVVTDIIPMRVIPPIILGSICYYMIGLRPGILHFIYFLISLVLTSTVASSMCMAISTISPTFGTANMVSILLLFVFLLFDGFLLARSSIPKYLIGLVWISFMSYGL 1088          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: PDR5_YEAST (Pleiotropic ABC efflux transporter of multiple drugs OS=Saccharomyces cerevisiae GN=PDR5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 56/221 (25.34%), Postives = 99/221 (44.80%), Query Frame = 2
Query:   20 YWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAV--SAIPVICVERTVYY-RERAAGMFSALSYALGQVAVEIIY-VTAQTVMYVLILY--------SMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIE 646
            +  YWR+P Y   +F++T    +F G  F+  G        LQ L   M +V +F    N +    +P    +R +Y  RER +  FS +S+   Q+ VE+ + + A T+ Y +  Y        S  G   E G   LF+ F  A +V     G+++++     + A  + S    +   F G M     +P +W + Y +SP+ + +  L+   V +++
Sbjct: 1196 FQQYWRSPDYLWSKFILTIFNQLFIGFTFFKAGTS------LQGLQNQMLAVFMFTVIFNPILQQYLPSFVQQRDLYEARERPSRTFSWISFIFAQIFVEVPWNILAGTIAYFIYYYPIGFYSNASAAGQLHERGA--LFWLFSCAFYVYVGSMGLLVISFNQVAESAANLASLLFTMSLSFCGVMTTPSAMPRFWIFMYRVSPLTYFIQALLAVGVANVD 1408          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: AB6G_ARATH (ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 47/202 (23.27%), Postives = 87/202 (43.07%), Query Frame = 2
Query:   35 RNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGD 640
            R P+   IR             +FW   Q  +  + +Q  LG  ++  +         A+PV   ER ++ RE A   +   SY L    V +  +   ++ +  I +  +G    L  F  +F  + ASF   + +   +  + P   +   ++   LA + LF+GF I R+ IP +W W++++S V +    ++  + GD
Sbjct:  436 RQPELFGIRLGAVLVTGFILATMFW---QLDNSPKGVQERLGC-FAFAMSTTFYTCADALPVFLQERFIFMRETAYNAYRRSSYVLSHSLVALPSLIILSLAFAAITFWGVGLDGGLMGFLFYFLVILASFWAGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPGYWIWFHYISLVKYPYEAVLLNEFGD 633          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCG8_DICDI (ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 56/218 (25.69%), Postives = 97/218 (44.50%), Query Frame = 2
Query:   17 QYWSY----WRNPQYNAIRFLMTATIAIFFGLLFWD--KGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFV--IFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIE 646
            QYW      WR    N    L     AI  G LF     G K S   D+Q ++G ++ +   L   +  S I +    R ++  ERA+ ++ +  Y L  + VE+      T++ V + Y +   + + G+FF  F  +  SF+  + T +   +  LT    +     S    ++ LFAGF +P  E+P  + W +W++P  +    +V  Q  D++
Sbjct:  356 QYWILLNREWRGFIRNKGNALSRVITAIVIGALFGSCFAGLKES-DADVQKIMGTLFFLTTGL-MLSPFSMITLFLSGRQLFNSERASKIYHSFPYFLSMITVELTIEFFVTLVEVTVCYMLARLRMDAGRFF--FAVLVYSFIHSLSTFFISSLANLTGTSDLTFSYASSLSVVFMLFAGFYVPTNELPRAFGWLHWVNPAFYGYSSVVINQFEDLQ 569          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: PDR15_YEAST (ATP-dependent permease PDR15 OS=Saccharomyces cerevisiae GN=PDR15 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 53/220 (24.09%), Postives = 102/220 (46.36%), Query Frame = 2
Query:   20 YWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAV--SAIPVICVERTVYY-RERAAGMFSALSYALGQVAVEIIY-VTAQTVMYVLILYSMIGFKWELG-------KFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIE 646
            +  YWR+P Y   +F++T    +F G  F+         + LQ L   M S+ ++    N +    +P    +R +Y  RER +  FS L++ L Q+ VEI + + A T+ Y +  Y+ +GF            +  LF+ F  A +V     G+++++     + A  + +    +   F G M   + +P +W + Y +SP+ + +  L+   V +++
Sbjct: 1211 FQQYWRSPDYLWSKFILTIFNQVFIGFTFF------KADRSLQGLQNQMLSIFMYTVIFNPILQQYLPSFVQQRDLYEARERPSRTFSWLAFFLSQIIVEIPWNILAGTIAYCIYYYA-VGFYANASAAGQLHERGALFWLFSIAFYVYIGSMGLLMISFNEVAETAAHMGTLLFTMALSFCGVMATPKVMPRFWIFMYRVSPLTYMIDALLALGVANVD 1423          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCG2_MOUSE (ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 48/193 (24.87%), Postives = 93/193 (48.19%), Query Frame = 2
Query:   38 NPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTN----AVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVT-AQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQV---ATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLS 592
            NPQ +  + ++T  + +  G +++D    ++    +QN  G      LF  TTN    +VSA+ +  VE+ ++  E  +G +   SY  G+V  +++ +    +V++  +LY M+G K  +  FF+    M+   ++      M +A+  GQ V   AT++++       LF+G ++    I  W  W  + S
Sbjct:  391 NPQASVAQLIVTVILGLIIGAIYFDLKYDAA---GMQNRAGV-----LFFLTTNQCFSSVSAVELFVVEKKLFIHEYISGYYRVSSYFFGKVMSDLLPMRFLPSVIFTCVLYFMLGLKKTVDAFFIM---MFTLIMVAYTASSMALAIATGQSVVSVATLLMTIAFVFMMLFSGLLVNLRTIGPWLSWLQYFS 572          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCGF_DICDI (ABC transporter G family member 15 OS=Dictyostelium discoideum GN=abcG15 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 47/203 (23.15%), Postives = 92/203 (45.32%), Query Frame = 2
Query:   29 YWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLY----GMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVT 625
            +WR+P Y+   F+ +A + +  G  F++    ++   D+   +  +++V + LG       +P    ++  + R+ A+  +  L +AL  + VE+ +V     ++    +   G   +    F F    W  F++F  Y    G  I A+     VA  +L   +    LF G ++  ++IP +W+W Y L+P    L  +VT
Sbjct: 1175 WWRSPGYSYGTFIQSALVGLINGWTFYNLQDSAN---DMNQRIFFIFNVTM-LGILLMFLVLPQFITQQDYFKRDYASKFYHWLPFALSIIVVELPFVLVSGTIFFFCSFWTAGLNSDASTNFFF----WLIFMLFLFYCVGFGQAIGAVCINITVALNLLPVLIIFLFLFCGVLVIPDQIPHFWKWVYHLNPCTHFLEAMVT 1369          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 46/193 (23.83%), Postives = 94/193 (48.70%), Query Frame = 2
Query:   38 NPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTN----AVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTA-QTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQ---QVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLS 592
            NPQ +  + ++T  + +  G +F+D     S    +QN  G      LF  TTN    +VSA+ ++ VE+ ++  E  +G +   SY  G++  +++ +    ++++  I Y ++G K  +G FF+    M+   ++      M +A+  GQ    VAT++++       +F+G ++  + +  W  W  + S
Sbjct:  392 NPQASVAQIIVTIILGLVIGAIFYDLKNDPS---GIQNRAGV-----LFFLTTNQCFSSVSAVELLVVEKKLFIHEYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPAVGSFFI---MMFTLMMVAYSASSMALAIAAGQSVVSVATLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYFS 573          
The following BLAST results are available for this feature:
BLAST of FC923953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
AB10G_ARATH1.242e-1222.99ABC transporter G family member 10 OS=Arabidopsis ... [more]
CDR3_CANAL1.622e-1225.33Opaque-specific ABC transporter CDR3 OS=Candida al... [more]
ABCGO_DICDI2.767e-1224.64ABC transporter G family member 24 OS=Dictyosteliu... [more]
PDR5_YEAST3.614e-1225.34Pleiotropic ABC efflux transporter of multiple dru... [more]
AB6G_ARATH6.165e-1223.27ABC transporter G family member 6 OS=Arabidopsis t... [more]
ABCG8_DICDI8.051e-1225.69ABC transporter G family member 8 OS=Dictyostelium... [more]
PDR15_YEAST1.794e-1124.09ATP-dependent permease PDR15 OS=Saccharomyces cere... [more]
ABCG2_MOUSE1.794e-1124.87ATP-binding cassette sub-family G member 2 OS=Mus ... [more]
ABCGF_DICDI2.343e-1123.15ABC transporter G family member 15 OS=Dictyosteliu... [more]
ABCG2_PIG2.343e-1123.83ATP-binding cassette sub-family G member 2 OS=Sus ... [more]

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Properties
Property NameValue
Genbank descriptionC31710H10EF StrClemenN Citrus clementina cDNA clone C31710H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923953 ID=FC923953; Name=FC923953; organism=Citrus clementina; type=EST; length=724bp
GGCTTCTTTCTGGAAACAGTATTGGTCTTACTGGAGAAATCCTCAATACA
ATGCTATTCGATTTCTCATGACTGCCACCATCGCCATTTTCTTCGGTCTT
CTCTTCTGGGACAAAGGACAGAAGAGTTCCAGACAACAGGATCTACAGAA
TCTTTTAGGAGCTATGTATTCGGTTTGTCTTTTCCTTGGGACCACCAATG
CCGTGTCTGCGATACCTGTTATCTGTGTTGAGAGAACGGTATACTACCGT
GAAAGAGCAGCCGGGATGTTTTCTGCATTGTCTTATGCACTTGGTCAAGT
TGCAGTAGAGATAATATATGTGACAGCTCAAACTGTCATGTATGTTCTTA
TCCTTTACTCGATGATAGGATTCAAGTGGGAGCTGGGAAAATTCTTCTTG
TTCTTCTACTTCATGTGGGCGTCTTTTGTCATTTTCACATTGTACGGAAT
GATGATTGTCGCATTGACTCCTGGCCAGCAAGTTGCTACCATTGTCTTGT
CCTTCTTCCTTGCACTATGGAACTTGTTCGCCGGTTTCATGATTCCCAGA
GAGGAAATTCCTGTCTGGTGGAGGTGGTACTACTGGCTTTCTCCGGTGGC
TTGGAATCTGTATGGCCTTGTGACTTGTCAAGTTGGTGACATAGAGACAC
TGGTGCAGATCCCTGATGGCACTTCATGACAGTGAAGCATTTGTCAAGAT
AATACGATACAGACTANTTCCTTC
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