FC923953

Overview
NameFC923953
Unique NameFC923953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14416 contig Ccv1_Contig14416:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: PDH1_CANGA (ATP-binding cassette transporter CGR1 OS=Candida glabrata GN=PDH1 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 52/220 (23.64%), Postives = 99/220 (45.00%), Query Frame = 2
Query:   20 YWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAV--SAIPVICVERTVYY-RERAAGMFSALSYALGQVAVEIIY-VTAQTVMYVLILYSMIGFKWELGKFF-------LFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIE 646
            +  YWR P Y   ++++T    +F G  F+           LQ L   M S+ ++    N +    +P    +R +Y  RER +  FS  ++ L Q+ VE+ + + A T+ Y +  YS +GF     +         LF+ F  A +V     G+ +++     + A  + S    +   F G M   + +P +W + Y +SP+ + +  L++  V +++
Sbjct: 1212 FQQYWRTPDYLWSKYILTIFNQLFIGFTFF------KADHTLQGLQNQMLSIFMYTVIFNPLLQQYLPTFVQQRDLYEARERPSRTFSWKAFILAQIVVEVPWNIVAGTLAYCIYYYS-VGFYANASQAHQLHERGALFWLFSIAFYVYVGSLGLFVISFNEVAETAAHIGSLMFTMALSFCGVMATPDAMPRFWIFMYRVSPLTYLIDALLSTGVANVD 1424          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCG7_DICDI (ABC transporter G family member 7 OS=Dictyostelium discoideum GN=abcG7 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 46/216 (21.30%), Postives = 96/216 (44.44%), Query Frame = 2
Query:   14 KQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICV-----ERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIE 646
            + +  ++RN      R      I + F   F   G  S  Q+D+  + G ++ +   L      + IP  C+      R V+  ERA+ ++ +L + L  +  E       +++  L++Y++   +W    FF+ ++ ++   ++  LY + I  +T    +  I  +     + LF G ++P +++P  + W +WL+P+    YG  T  V   +
Sbjct:  552 RNFKDFFRNSTQYITRLSGGFMIGLLFSACF---GTLSPSQEDVLKISGILFFLIAVL------NLIPFTCITLFLSNREVFNSERASKIYHSLPFYLSTITTEAFIQFLVSLIVSLLVYTINHLRWNFSSFFITYFILYLINLLSDLYIIAISNITGKSDLTFIYGTTISITFLLFMGHLVPVKQLPKSFGWIHWLNPL---YYGYATVMVAQFK 755          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: WHITE_LUCCU (Protein white OS=Lucilia cuprina GN=W PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 47/215 (21.86%), Postives = 92/215 (42.79%), Query Frame = 2
Query:    2 ASFWKQYWSYWRNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIE 646
            A  W+ + S  + P    +R + T  +A+  GL+F +   +   Q  + N+ GA++     +   N  + I V   E  V+ RE  + ++   +Y LG+   E+        +++ I Y MIG +  +  F      +     + T +G +I   +    +A  V       + LF G  +    +PV+++W  + S   +   GL+  Q  D++
Sbjct:  406 AIMWRSWISTLKEPLLVKVRLIQTTMVAVLIGLIFLN---QPMTQVGVMNINGAIFLFLTNMTFQNVFAVINVFTSELPVFMRETRSRLYRCDTYFLGKTLAELPLFLVVPFLFIAIAYPMIGLRPGITHFLSALALVTLVANVSTSFGYLISCASTSTSMALSVGPPLTIPFLLFGGVFLNSGSVPVYFKWLSYFSWFRYANEGLLINQWADVQ 617          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: ABCG2_RAT (ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 49/193 (25.39%), Postives = 93/193 (48.19%), Query Frame = 2
Query:   38 NPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTN----AVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVT-AQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQ---QVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLS 592
            NPQ +  + ++T  + +  G L++  G K+     +QN  G  + +     TTN    +VSA+ +  VE+ ++  E  +G +   SY  G++  +++ +    +V+Y  ILY M+G K  +  FF+    M+   ++      M +A+  GQ    VAT++++       LF+G ++    I  W  W  + S
Sbjct:  391 NPQASVAQLIVTVILGLIIGALYF--GLKND-PTGMQNRAGVFFFL-----TTNQCFTSVSAVELFVVEKKLFIHEYISGYYRVSSYFFGKLVSDLLPMRFLPSVIYTCILYFMLGLKRTVEAFFI---MMFTLIMVAYTASSMALAIAAGQSVVSVATLLMTISFVFMMLFSGLLVNLRTIGPWLSWLQYFS 572          
BLAST of FC923953 vs. ExPASy Swiss-Prot
Match: AB18G_ARATH (ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 48/225 (21.33%), Postives = 90/225 (40.00%), Query Frame = 2
Query:   14 KQYWSYW-RNPQYNAIRFLMTATIAIFFGLLFWDKGQKSSRQQDLQNLLGAMYSVCLFLGTTNAVSAIPVICVERTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWYYWLSPVAWNLYGLVTCQVGDIETL----VQIPDGT 673
            K+Y   W R P+   +R        +    ++W         Q+         S   +    N    IPV   ER ++ RE     +   SY +    V +  + A ++ +    +  +G    L  FF +   ++A+F   +     I  L P   ++ +V   +L+   L  GF I R+ IP++W W++++S + +    ++  +  D        VQ+ DGT
Sbjct:  409 KRYIKNWIRTPELIGMRIGTVMVTGLLLATVYWRLDNTPRGAQERMGFFAFGMSTMFYCCADN----IPVFIQERYIFLRETTHNAYRTSSYVISHALVSLPQLLALSIAFAATTFWTVGLSGGLESFFYYCLIIYAAFWSGSSIVTFISGLIPNVMMSYMVTIAYLSYCLLLGGFYINRDRIPLYWIWFHYISLLKYPYEAVLINEFDDPSRCFVKGVQVFDGT 629          
The following BLAST results are available for this feature:
BLAST of FC923953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PDH1_CANGA3.996e-1123.64ATP-binding cassette transporter CGR1 OS=Candida g... [more]
ABCG7_DICDI5.219e-1121.30ABC transporter G family member 7 OS=Dictyostelium... [more]
WHITE_LUCCU6.816e-1121.86Protein white OS=Lucilia cuprina GN=W PE=2 SV=2[more]
ABCG2_RAT6.816e-1125.39ATP-binding cassette sub-family G member 2 OS=Ratt... [more]
AB18G_ARATH6.816e-1121.33ABC transporter G family member 18 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC31710H10EF StrClemenN Citrus clementina cDNA clone C31710H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923953 ID=FC923953; Name=FC923953; organism=Citrus clementina; type=EST; length=724bp
GGCTTCTTTCTGGAAACAGTATTGGTCTTACTGGAGAAATCCTCAATACA
ATGCTATTCGATTTCTCATGACTGCCACCATCGCCATTTTCTTCGGTCTT
CTCTTCTGGGACAAAGGACAGAAGAGTTCCAGACAACAGGATCTACAGAA
TCTTTTAGGAGCTATGTATTCGGTTTGTCTTTTCCTTGGGACCACCAATG
CCGTGTCTGCGATACCTGTTATCTGTGTTGAGAGAACGGTATACTACCGT
GAAAGAGCAGCCGGGATGTTTTCTGCATTGTCTTATGCACTTGGTCAAGT
TGCAGTAGAGATAATATATGTGACAGCTCAAACTGTCATGTATGTTCTTA
TCCTTTACTCGATGATAGGATTCAAGTGGGAGCTGGGAAAATTCTTCTTG
TTCTTCTACTTCATGTGGGCGTCTTTTGTCATTTTCACATTGTACGGAAT
GATGATTGTCGCATTGACTCCTGGCCAGCAAGTTGCTACCATTGTCTTGT
CCTTCTTCCTTGCACTATGGAACTTGTTCGCCGGTTTCATGATTCCCAGA
GAGGAAATTCCTGTCTGGTGGAGGTGGTACTACTGGCTTTCTCCGGTGGC
TTGGAATCTGTATGGCCTTGTGACTTGTCAAGTTGGTGACATAGAGACAC
TGGTGCAGATCCCTGATGGCACTTCATGACAGTGAAGCATTTGTCAAGAT
AATACGATACAGACTANTTCCTTC
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