FC924870

Overview
NameFC924870
Unique NameFC924870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: PLCD_HUMAN (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Homo sapiens GN=AGPAT4 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.260e-25
Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  168 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            +F  SGL++N IQ    + + P++K  +R+IN                  +G +  +F D   Y   GKE+A+VV NHK +ID+L GW L++R G LG +  + KK   ++P+IGW  +F+E +F  R W +D  T+ + LQ LRDYP+ ++
Sbjct:   20 VFIASGLIINTIQLFTLL-LWPINKQLFRKINCRLSYCISSQLVMLLEWWSGTECTIFTDPRAYLKYGKENAIVVLNHKFEIDFLCGWSLSERFGLLGGSKVLAKKELAYVPIIGWMWYFTEMVFCSRKWEQDRKTVATSLQHLRDYPEKYF 170          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: PLCD_MACFA (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Macaca fascicularis GN=AGPAT4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 54/152 (35.53%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  168 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            +F  SGL++N +Q    + + P++K  +R+IN                  +G +  +F D   Y   GKE+A+VV NHK +ID+L GW L++R G LG +  + KK   ++P+IGW  +F+E +F  R W +D  T+ + LQ LRDYP+ ++
Sbjct:   20 VFIASGLIINTVQLFTLL-LWPINKQLFRKINCRLSYCISSQLVMLLEWWSGTECTIFTDPRAYPKYGKENAIVVLNHKFEIDFLCGWSLSERFGLLGGSKVLAKKELAYVPIIGWMWYFTEMVFCSRKWEQDRKTVATSLQHLRDYPEKYF 170          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: PLCD_RAT (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Rattus norvegicus GN=Agpat4 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.667e-25
Identity = 56/151 (37.09%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  168 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPF 620
            +F  SGL+VN IQ +C + I P++K  +R+IN                  +G +  ++ D +     GKE+A+VV NHK +ID+L GW LA+R G LG++  + KK   ++P+IGW  +F E +F  R W +D  T+   L  LRDYP+ +
Sbjct:   20 VFIASGLIVNAIQ-LCTLVIWPINKQLFRKINARLCYCVSSQLVMLLEWWSGTECTIYTDPKASPHYGKENAIVVLNHKFEIDFLCGWSLAERLGILGNSKVLAKKELAYVPIIGWMWYFVEMIFCTRKWEQDRQTVAKSLLHLRDYPEKY 169          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: PLCD_MOUSE (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Mus musculus GN=Agpat4 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.667e-25
Identity = 56/151 (37.09%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  168 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPF 620
            +F  SGL+VN IQ +C + I P++K  +R+IN                  +G +  ++ D +     GKE+A+VV NHK +ID+L GW LA+R G LG++  + KK   ++P+IGW  +F E +F  R W +D  T+   L  LRDYP+ +
Sbjct:   20 VFIASGLIVNAIQ-LCTLVIWPINKQLFRKINARLCYCVSSQLVMLLEWWSGTECTIYTDPKACPHYGKENAIVVLNHKFEIDFLCGWSLAERLGILGNSKVLAKKELAYVPIIGWMWYFVEMIFCTRKWEQDRQTVAKSLLHLRDYPEKY 169          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: LPAT4_ARATH (Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=LPAT4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 29/84 (34.52%), Postives = 47/84 (55.95%), Query Frame = 3
Query:  372 KEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            ++  L+++NH++++DW+  W +A R GCLG    V+K S   LP+ GW     E++ +ER    DE  L   L   +D  +P W
Sbjct:   96 EKRVLLIANHRTEVDWMYLWNIALRKGCLGYIKYVLKSSLMKLPIFGWGFHVLEFIPVERKREVDEPVLLQMLSSFKDPQEPLW 179          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: LPAT5_ARATH (Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=LPAT5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.770e-11
Identity = 27/84 (32.14%), Postives = 49/84 (58.33%), Query Frame = 3
Query:  372 KEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            ++  L+++NH++++DW+  W LA R G +G+   V+K S   LP+ GW+    E++ +ER W  DE+ L+  +   +D     W
Sbjct:   91 EDRVLLIANHRTEVDWMYFWDLALRKGQIGNIKYVLKSSLMKLPLFGWAFHLFEFIPVERRWEVDEANLRQIVSSFKDPRDALW 174          
The following BLAST results are available for this feature:
BLAST of FC924870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PLCD_HUMAN1.260e-2536.181-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCD_MACFA1.646e-2535.531-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCD_RAT3.667e-2537.091-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCD_MOUSE3.667e-2537.091-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
LPAT4_ARATH5.141e-1134.52Probable 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]
LPAT5_ARATH8.770e-1132.14Probable 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM01FM1 TF Citrus clementina cDNA clone KN0AAP6YM01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924870 ID=FC924870; Name=FC924870; organism=Citrus clementina; type=EST; length=623bp
TTATTTAAAATCTCAGATTTATTATAATCTCTTCTTGTTTTGCAAAGCGA
ACCCTCATTCTCTCTCTACAAATCAGAATCACAACACAAAAAAGAAAAAA
AGAAAGGAAAAGAATAGCAGAGGCCATGGCGATAGCAGCGGCAGCTGTCA
TCGTCCCATTGGGCCTTCTCTTCTTCATTTCAGGCCTCGTTGTCAATCTC
ATTCAGGCAGTTTGCTTTGTGACTATTCGCCCTCTATCGAAGAACACGTA
CAGGAGAATCAATAGATGGGTAGCGGAATTGTTATGGCTGGAACTTGTAT
GGATAGTTGATTGGTGGGCTGGAGTTAAGATCAAACTTTTCGTAGACCGT
GAAACGTATCGATTAATGGGTAAAGAACATGCACTTGTTGTTTCCAATCA
CAAAAGTGACATTGACTGGCTTGTTGGGTGGGTTTTGGCTCAGCGGTCAG
GTTGTCTTGGTAGCACATTGGCCGTTATGAAGAAATCATCAAAATTTCTT
CCGGTCATAGGTTGGTCAATGTGGTTTTCTGAATATCTCTTTCTGGAAAG
AAACTGGGCAAAGGATGAGAGCACATTAAAGTCAGGTCTCCAACGTCTAA
GAGACTATCCTCAACCCTTTTGG
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