FC924877
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_DICDI (40S ribosomal protein S13 OS=Dictyostelium discoideum GN=rps13 PE=3 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 7.896e-52 Identity = 103/151 (68.21%), Postives = 117/151 (77.48%), Query Frame = 3 Query: 9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461 MG MHS GKGIS S+LPY R P +W K ++ +V + +CK AK+G TPS+IG LRDS G+AQVK+VTGSKILRILK +GLAP IPEDLYHLIKKAV I KHL+R RKD D KF L LVESRIHRL R Y+K L P WKYES ASTLVA Sbjct: 1 MGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA 151
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_MUSDO (40S ribosomal protein S13 (Fragment) OS=Musca domestica GN=RpS13 PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46 Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 3 Query: 123 KFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461 K KKGLTPS+IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK LPP WKYES+TAS LVA Sbjct: 2 KLGKKGLTPSKIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 114
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS13_PIG (40S ribosomal protein S13 (Fragment) OS=Sus scrofa GN=RPS13 PE=3 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 7.407e-42 Identity = 81/107 (75.70%), Postives = 97/107 (90.65%), Query Frame = 3 Query: 9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 329 MG MH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRK Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_PYRKO (30S ribosomal protein S15P/S13e OS=Pyrococcus kodakaraensis GN=rps15p PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.767e-35 Identity = 72/150 (48.00%), Postives = 105/150 (70.00%), Query Frame = 3 Query: 9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458 M +H+R +G S S P + PP+W++ ++++VE + K K+G + + IG ILRD +GI VK +TG KI +IL+ +GLAPEIPEDL LI++AV +RKHLE++ KDK S+ L L+ES+I RL +YY++T KLP W+Y+ A LV Sbjct: 1 MARIHARKRGKSGSKRPPRTAPPAWVEYTAEEVEALVVKLRKEGYSTAMIGTILRDQYGIPSVKLITGKKITKILEENGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDKHSRRGLQLIESKIRRLVKYYRRTGKLPAKWRYDPEQAKLLV 150
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METKA (30S ribosomal protein S15P/S13e OS=Methanopyrus kandleri GN=rps15p PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.308e-35 Identity = 72/142 (50.70%), Postives = 98/142 (69.01%), Query Frame = 3 Query: 9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 434 M MHSR +G S S P + PPSW++ S ++VE + AK+G P+ IG+ LRD +GI VK +TG KI IL+ HGLAPE+PEDL +LI++A +R+HL+R+ KD SK L L+ES+IHRL +YYK+ LP WKY+ Sbjct: 1 MARMHSRDRGKSGSTRPPRVAPPSWVEYSPEEVESLVVDLAKQGYEPAMIGIKLRDEYGIPDVKLITGKKITEILEEHGLAPELPEDLLNLIRRAKRVREHLKRHPKDLHSKRGLQLIESKIHRLVKYYKRKGVLPEDWKYD 142
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_THEPD (30S ribosomal protein S15P/S13e OS=Thermofilum pendens (strain Hrk 5) GN=rps15p PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.937e-35 Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 3 Query: 24 SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 434 S+ KG S S P + P W+K+ ++VE+ + +KG PS IGVILRD +GI VK+VTG +L+IL+ GLAPEIPEDL +L+K+A+ +RKHLE + KD SK L L+ES+IHRL +YYK+ LPP WKYE Sbjct: 4 SKEKGRSGSTRPPQLKKPEWVKMRPEEVEELVVSLYRKGYPPSMIGVILRDQYGIPMVKAVTGKSVLQILRERGLAPEIPEDLMNLMKRAIRVRKHLEEHPKDYHSKRGLQLIESKIHRLVKYYKREGILPPDWKYE 140
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_METJA (30S ribosomal protein S15P/S13e OS=Methanocaldococcus jannaschii GN=rps15p PE=3 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34 Identity = 71/150 (47.33%), Postives = 101/150 (67.33%), Query Frame = 3 Query: 9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458 M MH+R +G S S P ++ P W++ + + VE + + AKKG +QIG+ILRD++GI VK +TG KI +I+K HGL P++PEDL +L+++AV +RKHLE++ KD SK L L+ES+I RL +YYK LP W+Y TA LV Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGIPDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKYYKSKGVLPADWRYTPETARLLV 150
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_META3 (30S ribosomal protein S15P/S13e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps15p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.160e-33 Identity = 71/150 (47.33%), Postives = 98/150 (65.33%), Query Frame = 3 Query: 9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 458 M +HS +G S S P + P+W I++++ E+ I K AK+G + IG+ILRDS+GI VK VTG + +I+K + + PEIPEDL++L+KKA+ +R HLE N KD SK L L ES+I RL +YY+ TK LP W+Y TA LV Sbjct: 1 MARLHSGKRGSSGSTRPLRTEVPAWANITAEETEEVIVKMAKEGKQSAMIGLILRDSYGIPDVKLVTGKSVAQIMKDNNVYPEIPEDLFNLMKKAINLRNHLEENTKDIHSKRGLQLTESKIRRLVKYYRNTKVLPAKWRYSPETARLLV 150
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_STAMF (30S ribosomal protein S15P/S13e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps15p PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33 Identity = 71/147 (48.30%), Postives = 99/147 (67.35%), Query Frame = 3 Query: 27 RGKGISASALPYKRTPPSWLKI--SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461 R KG S S P + PP WLK+ S D+E + + AKKG TPS IG+ILRD +G+ VK VTG K+++IL+ HG+ +PEDL L++KAV +R+HLE + KD +K L+ +ES+IHRL +YYK+ +LPP WKY A +V+ Sbjct: 5 RDKGQSHSTRPARAGPPRWLKLDMSPSDIELLVVELAKKGYTPSMIGIILRDQYGVPLVKQVTGKKLVQILEKHGIKLPVPEDLLFLMRKAVNLRRHLEEHPKDFHAKKGLLDLESKIHRLVKYYKRIGRLPPDWKYTPEQAKLIVS 151
BLAST of FC924877 vs. ExPASy Swiss-Prot
Match: RS15_UNCMA (30S ribosomal protein S15P/S13e OS=Uncultured methanogenic archaeon RC-I GN=rps15p PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.812e-33 Identity = 67/151 (44.37%), Postives = 95/151 (62.91%), Query Frame = 3 Query: 9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461 M MH+R KG S S P ++TPP+W +S ++VE + K + T SQ+G+ILRD +G+ + VTG K+ ILK +G P++PEDL +LIKKA+ + KHL+ N KD +K L L ES++ RL +YY T LP W Y TA L++ Sbjct: 1 MAKMHTRRKGRSRSTRPVRKTPPAWFTMSKEEVEKLVVKTYGQNATTSQVGIILRDKYGVPDITQVTGKKVTAILKENGTGPKLPEDLVNLIKKAIRLHKHLDENHKDLHNKRALQLTESKVRRLVKYYHATGVLPMDWVYSPATAEILIS 151 The following BLAST results are available for this feature:
BLAST of FC924877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >FC924877 ID=FC924877; Name=FC924877; organism=Citrus clementina; type=EST; length=724bpback to top |