FC924883

Overview
NameFC924883
Unique NameFC924883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1790 contig Ccv1_Contig1790:10..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAAB (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIETLLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAA9 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain JH9) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAA8 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain NCTC 8325) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAA3 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain USA300) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAA2 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain JH1) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAA1 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=odhA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 76/209 (36.36%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + PN  E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAAU (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus GN=odhA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.913e-28
Identity = 75/209 (35.89%), Postives = 112/209 (53.59%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + P   E+ W QEEP N GA+ Y+ P
Sbjct:  711 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPKLEEVSWVQEEPKNQGAWLYVYP 886
[Close]
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_STAAN (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain N315) GN=odhA PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.913e-28
Identity = 75/209 (35.89%), Postives = 112/209 (53.59%), Query Frame = 1 
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISP 615
            GL + LPH Y+GQGPEHSSARLERFLQ++ +N                  N  +VN+++ +NYFH+LR Q   +     +PL+VMSPK+LLR+K     + EF       GF+   T            S   + + +++L +GK++ +L E   K     V +  +E+L PFP + ++  L + P   E+ W QEEP N GA+ Y+ P
Sbjct:  689 GLTLFLPHAYEGQGPEHSSARLERFLQLAAEN------------------NCTVVNLSSSSNYFHLLRAQAASLDSEQMRPLVVMSPKSLLRNKTVAKPIDEFTS----GGFEPILT-----------ESYQADKVTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPKLEEVSWVQEEPKNQGAWLYVYP 864
The following BLAST results are available for this feature:
BLAST of FC924883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_STAAB5.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAA95.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAA85.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAA35.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAA25.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAA15.870e-2936.362-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAAU2.913e-2835.892-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAAN2.913e-2835.892-oxoglutarate dehydrogenase E1 component OS=Staph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL02FM1 TF Citrus clementina cDNA clone KN0AAP1YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924883 ID=FC924883; Name=FC924883; organism=Citrus clementina; type=EST; length=644bp
GGACTTGTTGTGCTGCTCCCACATGGTTATGATGGTCAGGGCCCTGAACA
TTCAAGTGCACGATTGGAGCGTTTCCTTCAGATGAGTGATGACAATCCAT
TTGTTATACCTGAGATGGATCCAACTCTTCGGAAACAAATTCAAGAATGT
AACTGGCAGATTGTGAATGTTACAACTCCTGCTAATTATTTCCATGTTTT
GCGGCGTCAGATACACAGGGGATTCCGTAAGCCTCTCATCGTGATGTCAC
CCAAAAACCTGTTGCGTCACAAGGACTGCAAATCAAATCTTTCCGAGTTT
GATGATGTCCAAGGTCACCCTGGTTTTGACAAACAAGGGACCAGATTTAA
GCGGCTTATTAAGGATCAGAATGGGCACTCTGATCTTGAGGAGGGTATCA
GACGTCTGGTTCTTTGTTCTGGAAAGGTTTATTACGAGCTTGATGAAGAG
CGGAAGAAGCGCAGTGCAAGTGATGTTGCAATTTGCAGGGTGGAACAGCT
TTGTCCTTTCCCATATGACCTGGTTCAGCGTGAGCTTAAACGATATCCAA
ATGCCGAGATCGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGCGTAC
ACCTACATTTCACCCCGACTTGCCACTGCCATGAAAGCATTGGG
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