FC924883

Overview
NameFC924883
Unique NameFC924883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1790 contig Ccv1_Contig1790:10..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: DHTK1_DROME (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial OS=Drosophila melanogaster GN=CG1544 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.630e-42
Identity = 96/206 (46.60%), Postives = 121/206 (58.74%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNAE-IVWCQEEPMNMGAYTYISPR 618
            LV+LLPHGYDG   EHSS R+ERFLQ+ D                    N  IVN TTPA Y+HVLRRQ+ R FRKPL+V++PK LLR     S   +F          + GT F  ++ D        E +R+++LCSGK YY L EER+KR A D AI R+E LCPFP   +Q +L +Y N +  VW QEE  NMGA+T++ PR
Sbjct:  694 LVMLLPHGYDGAASEHSSCRIERFLQLCDSKE---------TSADGDSVNVHIVNPTTPAQYYHVLRRQLARNFRKPLVVVAPKTLLRLPAATSTHEDF----------QPGTLFHNVLGDTIAKP---EQVRKVILCSGKHYYTLAEEREKRQAYDTAILRLESLCPFPIQELQAQLAQYGNVQSFVWSQEEHRNMGAWTFVRPR 877          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_RICBR (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia bellii (strain RML369-C) GN=sucA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.047e-42
Identity = 104/214 (48.60%), Postives = 130/214 (60.75%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLE-EGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRLATAMK 636
            GLVVLLPHG++GQGPEHSSARLERFLQ++ ++                  N  +   TTPA+ FH+LRRQI    RKPLIVMSPK+LLRHK+  S L E              T F  ++ + N    LE   I +++LCSGKVYY+L E R   S S +AI R+EQL PF   +V   LK+Y  A E +WCQEEPMNMGA+ YI+  L  A+K
Sbjct:  705 GLVVLLPHGFEGQGPEHSSARLERFLQLAAED------------------NMYVTYPTTPASIFHLLRRQIIDNVRKPLIVMSPKSLLRHKNVVSKLDELG----------SNTTFLPVLDEVN---KLEASNITKVILCSGKVYYDLFEMR--GSNSSIAIIRLEQLYPFEKKVVVELLKKYNKASEFIWCQEEPMNMGAWRYITSHLNNALK 885          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: DHTK1_RAT (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Rattus norvegicus GN=Dhtkd1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.001e-41
Identity = 95/209 (45.45%), Postives = 126/209 (60.29%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSAS--DVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPR 618
            GLV+LLPHGYDG GP+HSS R+ERFLQM D     +              N  +V+ TTPA YFH+LRRQ+ R FRKPLIV SPK LLR+    S L E             GT FK +I D    S   + ++ L+ CSGK +Y L ++R+   A   D AI R+E+LCPFP D +Q+E+ +Y +  +I+W QEEP NMG ++++ PR
Sbjct:  692 GLVILLPHGYDGAGPDHSSCRIERFLQMCDSAEEGVDS---------DTVNMFVVHPTTPAQYFHLLRRQMMRNFRKPLIVASPKMLLRYPVAVSTLEEM----------APGTAFKPVIGDS---SVDPKNVKTLIFCSGKHFYALLKQRESLGAKKRDFAIIRLEELCPFPLDSLQQEMGKYKHVQDIIWSQEEPQNMGPWSFVYPR 878          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_GEOSW (2-oxoglutarate dehydrogenase E1 component OS=Geobacillus sp. (strain WCH70) GN=odhA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.732e-41
Identity = 91/212 (42.92%), Postives = 127/212 (59.91%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASD-VAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSS RLERFLQ++ +N                  NW + N++T A YFH+LRRQ   + R   +PL++M+PK+LLRH    S++ EF + Q HP            + +Q G  +  E + R++LC+GK   +L E+  K    D + I RVE+L PFP + +Q    RYPN  EI+W QEEP NMG++ Y+ P+L
Sbjct:  725 GLVMLLPHGYEGQGPEHSSGRLERFLQLAAEN------------------NWTVANLSTAAQYFHILRRQAGILQREEVRPLVLMTPKSLLRHPLAASDVEEFTNGQFHP------------VIEQKGLGENREKVERIILCTGKFAIDLAEQINKMEGLDWLHIVRVEELYPFPKEELQAIFARYPNVKEIIWAQEEPKNMGSWCYVEPKL 906          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_ECOLI (2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli (strain K12) GN=sucA PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.945e-40
Identity = 91/202 (45.05%), Postives = 126/202 (62.38%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLE-EGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            GLV+LLPHGY+GQGPEHSSARLER+LQ+                    E N Q+   +TPA  +H+LRRQ  RG R+PL+VMSPK+LLRH    S+L E  +    P   +                +L+ +G++R+V+CSGKVYY+L E+R+K +  DVAI R+EQL PFP+  +Q  L+++ +  + VWCQEEP+N GA+
Sbjct:  713 GLVMLLPHGYEGQGPEHSSARLERYLQLC------------------AEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEI--------------DELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAW 882          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_ECOL6 (2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6 GN=sucA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.945e-40
Identity = 91/202 (45.05%), Postives = 126/202 (62.38%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLE-EGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            GLV+LLPHGY+GQGPEHSSARLER+LQ+                    E N Q+   +TPA  +H+LRRQ  RG R+PL+VMSPK+LLRH    S+L E  +    P   +                +L+ +G++R+V+CSGKVYY+L E+R+K +  DVAI R+EQL PFP+  +Q  L+++ +  + VWCQEEP+N GA+
Sbjct:  713 GLVMLLPHGYEGQGPEHSSARLERYLQLC------------------AEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEI--------------DELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAW 882          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_ECO57 (2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O157:H7 GN=sucA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.945e-40
Identity = 91/202 (45.05%), Postives = 126/202 (62.38%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLE-EGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            GLV+LLPHGY+GQGPEHSSARLER+LQ+                    E N Q+   +TPA  +H+LRRQ  RG R+PL+VMSPK+LLRH    S+L E  +    P   +                +L+ +G++R+V+CSGKVYY+L E+R+K +  DVAI R+EQL PFP+  +Q  L+++ +  + VWCQEEP+N GA+
Sbjct:  713 GLVMLLPHGYEGQGPEHSSARLERYLQLC------------------AEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEI--------------DELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAW 882          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: DHTK1_CAEEL (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial OS=Caenorhabditis elegans GN=ZK836.2 PE=2 SV=4)

HSP 1 Score: 165.236 bits (417), Expect = 2.541e-40
Identity = 90/213 (42.25%), Postives = 127/213 (59.62%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASD-VAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRLATAM 633
            GL +LLPHG+DG GPEHSS R+ERFLQ+ D      P          +  N ++ N TT A YFH+LRRQ+   +RKPLIV+ PK LLRH    S ++EF            GT ++ +I ++  H+   + I++++  SGK +  +++ R +R   D VAI RVE LCPFP   +Q  LK+YP A + VW QEEP N GA++++ PR   A+
Sbjct:  682 GLTMLLPHGFDGAGPEHSSCRMERFLQLCDSREDQTPVDG-------ENVNMRVANPTTSAQYFHLLRRQVVPNYRKPLIVVGPKILLRHPKAASTINEFG----------PGTTYQNVISEE--HATSSQKIKKVIFVSGKHWINVEKARDERGLKDSVAIVRVEMLCPFPVVDLQAVLKKYPGAQDFVWSQEEPRNAGAWSFVRPRFENAL 875          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_COXBU (2-oxoglutarate dehydrogenase E1 component OS=Coxiella burnetii GN=sucA PE=3 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.318e-40
Identity = 92/215 (42.79%), Postives = 131/215 (60.93%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERK--KRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRLATAMK 636
            G+V+ LPHGY+G+GPEHSSARLER+LQ+   N                  N Q+   TTP+  FH+LRRQ+ R +RKPL+V++PK++LR+K   S+L            D    + K LI +   H    + I R++LCSGKVYY+L  +R+  K   + +A+ R+EQL PFPYD ++ EL++YPNA +++WCQEEP N GA+     RL   M+
Sbjct:  713 GIVLFLPHGYEGKGPEHSSARLERYLQLCAQN------------------NMQVCAPTTPSQIFHLLRRQVLRPYRKPLVVLTPKSVLRNKLAVSSLE-----------DLARGQLKLLIPEIEKHD--PKKITRVILCSGKVYYDLLAKRREHKGKLNHIAMIRIEQLYPFPYDELKAELEKYPNAKQVIWCQEEPKNQGAWFCTRHRLIKCMR 896          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: DHTK1_HUMAN (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Homo sapiens GN=DHTKD1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.318e-40
Identity = 95/209 (45.45%), Postives = 124/209 (59.33%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSAS--DVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPR 618
            G+V+LLPHGYDG GP+HSS R+ERFLQM D     +              N  +V+ TTPA YFH+LRRQ+ R FRKPLIV SPK LLR     S L E             GT F  +I D    S   + ++ LV CSGK +Y L ++R+   A   D AI RVE+LCPFP D +Q+E+ +Y +  + +W QEEP NMG ++++SPR
Sbjct:  692 GIVILLPHGYDGAGPDHSSCRIERFLQMCDSAEEGVDG---------DTVNMFVVHPTTPAQYFHLLRRQMVRNFRKPLIVASPKMLLRLPAAVSTLQEM----------APGTTFNPVIGDS---SVDPKKVKTLVFCSGKHFYSLVKQRESLGAKKHDFAIIRVEELCPFPLDSLQQEMSKYKHVKDHIWSQEEPQNMGPWSFVSPR 878          
The following BLAST results are available for this feature:
BLAST of FC924883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
DHTK1_DROME4.630e-4246.60Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_RICBR6.047e-4248.602-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
DHTK1_RAT3.001e-4145.45Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_GEOSW8.732e-4142.922-oxoglutarate dehydrogenase E1 component OS=Geoba... [more]
ODO1_ECOLI1.945e-4045.052-oxoglutarate dehydrogenase E1 component OS=Esche... [more]
ODO1_ECOL61.945e-4045.052-oxoglutarate dehydrogenase E1 component OS=Esche... [more]
ODO1_ECO571.945e-4045.052-oxoglutarate dehydrogenase E1 component OS=Esche... [more]
DHTK1_CAEEL2.541e-4042.25Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_COXBU3.318e-4042.792-oxoglutarate dehydrogenase E1 component OS=Coxie... [more]
DHTK1_HUMAN3.318e-4045.45Probable 2-oxoglutarate dehydrogenase E1 component... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL02FM1 TF Citrus clementina cDNA clone KN0AAP1YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924883 ID=FC924883; Name=FC924883; organism=Citrus clementina; type=EST; length=644bp
GGACTTGTTGTGCTGCTCCCACATGGTTATGATGGTCAGGGCCCTGAACA
TTCAAGTGCACGATTGGAGCGTTTCCTTCAGATGAGTGATGACAATCCAT
TTGTTATACCTGAGATGGATCCAACTCTTCGGAAACAAATTCAAGAATGT
AACTGGCAGATTGTGAATGTTACAACTCCTGCTAATTATTTCCATGTTTT
GCGGCGTCAGATACACAGGGGATTCCGTAAGCCTCTCATCGTGATGTCAC
CCAAAAACCTGTTGCGTCACAAGGACTGCAAATCAAATCTTTCCGAGTTT
GATGATGTCCAAGGTCACCCTGGTTTTGACAAACAAGGGACCAGATTTAA
GCGGCTTATTAAGGATCAGAATGGGCACTCTGATCTTGAGGAGGGTATCA
GACGTCTGGTTCTTTGTTCTGGAAAGGTTTATTACGAGCTTGATGAAGAG
CGGAAGAAGCGCAGTGCAAGTGATGTTGCAATTTGCAGGGTGGAACAGCT
TTGTCCTTTCCCATATGACCTGGTTCAGCGTGAGCTTAAACGATATCCAA
ATGCCGAGATCGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGCGTAC
ACCTACATTTCACCCCGACTTGCCACTGCCATGAAAGCATTGGG
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