FC924883

Overview
NameFC924883
Unique NameFC924883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1790 contig Ccv1_Contig1790:10..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACAA (2-oxoglutarate dehydrogenase E1 component OS=Bacillus anthracis (strain A0248) GN=odhA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.595e-34
Identity = 85/215 (39.53%), Postives = 124/215 (57.67%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEE----RKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSSAR ERFLQ++ +N                  NW + N+T+ A YFH+LRRQ   +     +PL++M+PK+LLRH    S  ++  + +  P  +++    K               ++RLVL +GK+  +L  E    R + +  ++ I R+EQL PFP + VQ  +KR+ N  EI+W QEEP NMGA+ Y++P L
Sbjct:  712 GLVLLLPHGYEGQGPEHSSARPERFLQLAAEN------------------NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTANQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESGRHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKNLEEIIWVQEEPRNMGAWHYMAPIL 896          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACP2 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus pumilus (strain SAFR-032) GN=odhA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.553e-34
Identity = 89/213 (41.78%), Postives = 119/213 (55.87%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFR---KPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEE--RKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSS R ERFLQ + +N                  NW + N+T+ A YFH+LRRQ     R   +PL++M+PK+LLR+ +  S + E  D Q  P  ++ G     L+ D        E + RLVL SGKV  ++ +   + +     + I RVEQL PFP   ++  L +  N  EIVW QEEP NMGA+ YI P L
Sbjct:  717 GLVMLLPHGYEGQGPEHSSGRTERFLQSAAEN------------------NWTVANLTSAAQYFHILRRQAKMLLREEIRPLVIMTPKSLLRNPNSLSEVQELTDGQFQPVLEQPG-----LVHD-------HEKVSRLVLSSGKVSIDISDRFTQMEEPKDWLHIARVEQLYPFPAKDIKAILSKLTNLEEIVWTQEEPQNMGAWGYIEPYL 899          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_BACCN (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=odhA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.303e-33
Identity = 86/217 (39.63%), Postives = 124/217 (57.14%), Query Frame = 1
Query:    1 GLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQ---IHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGF--DKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEE----RKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRL 621
            GLV+LLPHGY+GQGPEHSSAR ERFLQ++ +N                  NW + N+T+ A YFH+LRRQ   +     +PL++M+PK+LLRH    S  SE  +    P    +K GT+  +              ++RL+  +GK+  +L  E    + + +  ++ I R+EQL PFP + VQ  +KR+ N  EI+W QEEP NMGA+ Y++P L
Sbjct:  715 GLVLLLPHGYEGQGPEHSSARPERFLQLAAEN------------------NWTVANLTSAAQYFHILRRQASILGTEAVRPLVIMTPKSLLRHPLTASTGSELSEGCFQPALEQEKLGTKPTK--------------VKRLIFTTGKMAIDLAAEIESGKHEYNLDELHIVRIEQLYPFPAEKVQSIIKRFKNLEEIIWVQEEPRNMGAWHYMAPIL 899          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_CORGL (2-oxoglutarate dehydrogenase E1 component OS=Corynebacterium glutamicum GN=odhA PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.131e-33
Identity = 74/207 (35.75%), Postives = 120/207 (57.97%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAYTYISPRL 621
            L++LLPHGY+GQGP+HSSAR+ERFLQ+  +    + +                   +TPAN+FH+LRR      ++PL++ +PK++LR+K   S   +F +V          T+F+ +I D N     +  +++++L SGK+YYEL + ++K    D+AI R+E L P P++ +   L  YPNA E+++ Q+EP N G + +    L
Sbjct: 1038 LILLLPHGYEGQGPDHSSARIERFLQLCAEGSMTVAQP------------------STPANHFHLLRRHALSDLKRPLVIFTPKSMLRNKAAASAPEDFTEV----------TKFQSVINDPNVADAAK--VKKVMLVSGKLYYELAKRKEKDGRDDIAIVRIEMLHPIPFNRISEALAGYPNAEEVLFVQDEPANQGPWPFYQEHL 1214          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCUA (2-oxoglutarate decarboxylase OS=Mycobacterium ulcerans (strain Agy99) GN=kgd PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.701e-33
Identity = 79/203 (38.92%), Postives = 119/203 (58.62%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKD---QNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+S R+ERFLQ+                    E +  I   +TP+NYFH+LRR    G ++PLIV +PK++LR+K   S++ +F ++           +F+ ++++   ++G  D    + R++L SGK+YYE+   + K    DVAI RVEQL P P   ++  L RYPNA E  W QEEP N GA+
Sbjct: 1016 VVLLLPHGHEGQGPDHTSGRIERFLQLW------------------AEGSMTIAMPSTPSNYFHLLRRHALDGIQRPLIVFTPKSMLRNKAAVSDIKDFTEI-----------KFRSVLEEPTYEDGVGD-RNLVNRILLTSGKIYYEMVARKAKDKREDVAIVRVEQLAPLPRRRLRETLDRYPNAKEFFWVQEEPANQGAW 1188          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: ODO1_OCEIH (2-oxoglutarate dehydrogenase E1 component OS=Oceanobacillus iheyensis GN=odhA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.752e-33
Identity = 87/213 (40.85%), Postives = 121/213 (56.81%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQI---HRGFRKPLIVMSPK-NLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNGHSDLEEGIRRLVLCSGKVYYELDE--ERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPN-AEIVWCQEEPMNMGAYTYISPRL 621
            +V+LLPHGY+GQGPEHSSARLERFLQM+ +N                  NW + NVT+ A  FH+LRRQ     R   +PL++M+PK +L+RH    +   EF D     GF          ++DQ G     E + RLV+ SGK+  +++E  +    +   + I RVEQ+ PFP   ++ E+K+ PN  EIVW QEEP NMGA+ ++   L
Sbjct:  718 MVLLLPHGYEGQGPEHSSARLERFLQMAAEN------------------NWIVANVTSSAQLFHILRRQAAMRDRDEARPLVLMTPKSSLIRHPRMGATAEEFTD----GGF--------LALRDQPGFEANREKVTRLVVGSGKMMIDIEEAMDDSDETYDWLQIKRVEQIYPFPKKALEEEIKQLPNLKEIVWVQEEPKNMGAWNFVDDYL 900          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCS2 (2-oxoglutarate decarboxylase OS=Mycobacterium smegmatis GN=kgd PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.752e-33
Identity = 80/203 (39.41%), Postives = 118/203 (58.13%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQ---NGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+S R+ERFLQ+                    E +  I   +TPANYFH+LRR    G ++PLIV +PK++LR+K   S++ +F +           ++F+ ++++    +G  D  + + RL+L SGK+YYEL   + K +  DVAI R+EQL P P   +   L RYPN  E  W QEEP N GA+
Sbjct: 1005 VVLLLPHGHEGQGPDHTSGRIERFLQLW------------------AEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-----------SKFRSVLEEPMYTDGEGDRNK-VTRLLLTSGKIYYELAARKAKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAW 1177          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCTU (2-oxoglutarate decarboxylase OS=Mycobacterium tuberculosis GN=kgd PE=1 SV=4)

HSP 1 Score: 139.428 bits (350), Expect = 1.493e-32
Identity = 78/203 (38.42%), Postives = 120/203 (59.11%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKD---QNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+SAR+ERFLQ+                    E +  I   +TP+NYFH+LRR    G ++PLIV +PK++LRHK   S + +F ++           +F+ ++++   ++G  D  + + R++L SGK+YYEL   + K + +D+AI R+EQL P P   ++  L RY N  E  W QEEP N GA+
Sbjct: 1009 VVLLLPHGHEGQGPDHTSARIERFLQLW------------------AEGSMTIAMPSTPSNYFHLLRRHALDGIQRPLIVFTPKSMLRHKAAVSEIKDFTEI-----------KFRSVLEEPTYEDGIGDRNK-VSRILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYENVKEFFWVQEEPANQGAW 1181          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCTA (2-oxoglutarate decarboxylase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=kgd PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.493e-32
Identity = 78/203 (38.42%), Postives = 120/203 (59.11%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKD---QNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+SAR+ERFLQ+                    E +  I   +TP+NYFH+LRR    G ++PLIV +PK++LRHK   S + +F ++           +F+ ++++   ++G  D  + + R++L SGK+YYEL   + K + +D+AI R+EQL P P   ++  L RY N  E  W QEEP N GA+
Sbjct: 1009 VVLLLPHGHEGQGPDHTSARIERFLQLW------------------AEGSMTIAMPSTPSNYFHLLRRHALDGIQRPLIVFTPKSMLRHKAAVSEIKDFTEI-----------KFRSVLEEPTYEDGIGDRNK-VSRILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYENVKEFFWVQEEPANQGAW 1181          
BLAST of FC924883 vs. ExPASy Swiss-Prot
Match: KGD_MYCPA (2-oxoglutarate decarboxylase OS=Mycobacterium paratuberculosis GN=kgd PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.493e-32
Identity = 79/203 (38.92%), Postives = 120/203 (59.11%), Query Frame = 1
Query:    4 LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQIVNVTTPANYFHVLRRQIHRGFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKD---QNGHSDLEEGIRRLVLCSGKVYYELDEERKKRSASDVAICRVEQLCPFPYDLVQRELKRYPNA-EIVWCQEEPMNMGAY 600
            +V+LLPHG++GQGP+H+SAR+ERFLQ+                    E +  I   +TP+NYFH+LRR    G ++PLIV +PK++LR+K   S++ +F ++           +F+ ++++   ++G  D  + + R++L SGK+YYEL   + K +  DVAI R+EQL P P   +   L RYPN  E  W QEEP N GA+
Sbjct: 1025 VVLLLPHGHEGQGPDHTSARIERFLQLW------------------AEGSMTIAMPSTPSNYFHLLRRHALDGIKRPLIVFTPKSMLRNKAAVSDIKDFTEI-----------KFRSVLEEPTYEDGIGDRGK-VSRVLLTSGKLYYELVARKNKDNRDDVAIVRIEQLAPLPKRRLGETLDRYPNVREYFWVQEEPANQGAW 1197          
The following BLAST results are available for this feature:
BLAST of FC924883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_BACAA1.595e-3439.532-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACP23.553e-3441.782-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACCN2.303e-3339.632-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_CORGL5.131e-3335.752-oxoglutarate dehydrogenase E1 component OS=Coryn... [more]
KGD_MYCUA6.701e-3338.922-oxoglutarate decarboxylase OS=Mycobacterium ulce... [more]
ODO1_OCEIH8.752e-3340.852-oxoglutarate dehydrogenase E1 component OS=Ocean... [more]
KGD_MYCS28.752e-3339.412-oxoglutarate decarboxylase OS=Mycobacterium smeg... [more]
KGD_MYCTU1.493e-3238.422-oxoglutarate decarboxylase OS=Mycobacterium tube... [more]
KGD_MYCTA1.493e-3238.422-oxoglutarate decarboxylase OS=Mycobacterium tube... [more]
KGD_MYCPA1.493e-3238.922-oxoglutarate decarboxylase OS=Mycobacterium para... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL02FM1 TF Citrus clementina cDNA clone KN0AAP1YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924883 ID=FC924883; Name=FC924883; organism=Citrus clementina; type=EST; length=644bp
GGACTTGTTGTGCTGCTCCCACATGGTTATGATGGTCAGGGCCCTGAACA
TTCAAGTGCACGATTGGAGCGTTTCCTTCAGATGAGTGATGACAATCCAT
TTGTTATACCTGAGATGGATCCAACTCTTCGGAAACAAATTCAAGAATGT
AACTGGCAGATTGTGAATGTTACAACTCCTGCTAATTATTTCCATGTTTT
GCGGCGTCAGATACACAGGGGATTCCGTAAGCCTCTCATCGTGATGTCAC
CCAAAAACCTGTTGCGTCACAAGGACTGCAAATCAAATCTTTCCGAGTTT
GATGATGTCCAAGGTCACCCTGGTTTTGACAAACAAGGGACCAGATTTAA
GCGGCTTATTAAGGATCAGAATGGGCACTCTGATCTTGAGGAGGGTATCA
GACGTCTGGTTCTTTGTTCTGGAAAGGTTTATTACGAGCTTGATGAAGAG
CGGAAGAAGCGCAGTGCAAGTGATGTTGCAATTTGCAGGGTGGAACAGCT
TTGTCCTTTCCCATATGACCTGGTTCAGCGTGAGCTTAAACGATATCCAA
ATGCCGAGATCGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGCGTAC
ACCTACATTTCACCCCGACTTGCCACTGCCATGAAAGCATTGGG
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