FC924898

Overview
NameFC924898
Unique NameFC924898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.604e-24
Identity = 53/133 (39.85%), Postives = 82/133 (61.65%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRA 401
            SG+ V+D     F EL+    HRYV FK++           GGP  +Y+DF + LPE DCRYA++D++F   +  Q++KI FI W+P  + I++KM+Y ++KD   ++L GI  E+QATD  E+  + + +RA
Sbjct:    2 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.130e-23
Identity = 56/137 (40.88%), Postives = 83/137 (60.58%), Query Frame = 3
Query:    9 MGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXT-----GGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            M + D    TFLEL+ ++  R +++KI+                G   +SY++F  SLP ++CRYA+ D +FV  E     KI FIAWSPS +++R KM+Y+++KDRF REL+GI  E  ATD T++ L+ +R R N
Sbjct:    1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.883e-22
Identity = 53/135 (39.26%), Postives = 82/135 (60.74%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSEN-CQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SG+ VAD+S   F +L+  K +++V++ I           T   ++SYD+F   LPENDC YA+YDF++    N  ++SKI F  WSP  + +R+KM+YA+SKD   R L G+  +IQ TD +E+  E + +R +
Sbjct:    4 SGVSVADESLQAFNDLKLGKKYKFVLYGISEDKTTIVVKETS-TSQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.883e-22
Identity = 56/135 (41.48%), Postives = 81/135 (60.00%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDF-VTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SG+ V D +   F EL+  K   ++I+KI+           G   +SYD F   LPENDCRYAVYDF++ ++S   ++SK+ F  WSP  + +R+KM+YA+SKD   R L GI  EIQ TD +E+  E + +R +
Sbjct:   14 SGVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEG-TTDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLERVS 147          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 51/135 (37.78%), Postives = 83/135 (61.48%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDF-VTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SG+ VAD+S T F +L+  K ++++IF ++          T   ++ YD F   LPEN+C+YA+YDF++ +     ++SKI F  WSP  + I++KM+YA+SKD   R L G+  ++Q TD +E+  E + DR +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 54/135 (40.00%), Postives = 80/135 (59.26%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSEN-CQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SG+ VAD+S   F +L+    +++V+F ++          T     SYD F   LPENDC YAVYDF++  SE+  ++SKI F  WSP  + +R KM+YA+SKD   R L G+  EIQ TD +E+  E + ++ +
Sbjct:    4 SGVAVADESIQAFNDLKLGMKYKFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEKVS 137          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.826e-21
Identity = 50/135 (37.04%), Postives = 81/135 (60.00%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDF-VTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SG+ VAD+S T F +L+  K +++++F ++          T     SYD F   LPENDC YA+YDF++ +     ++SKI F  WSP  + +R+KM+YA+SKD   R L G+  ++Q TD +E+  + + +R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.695e-20
Identity = 52/135 (38.52%), Postives = 82/135 (60.74%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDF-VTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SG+ VAD+S T F +L+  K +++V+F ++          T    + YD F   LPE+DC YAVYDF++ ++    ++SKI F  WSP  + IR+KM+YA+SKD   R L G+  +IQ TD +E+  E + ++ +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNERD-YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEKVS 137          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.214e-20
Identity = 50/135 (37.04%), Postives = 80/135 (59.26%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSEN-CQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SG+ VAD+S   F +L+  K ++++++ ++          T    + YD F   LPENDC YAVYDF++    N  ++SKI F  WSP  + +R+KM+YA+SKD   R L G+  +IQ TD +E+  E + ++ +
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAE-QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEKVS 137          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.892e-20
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSE-NCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDR 398
            SG+ V+D++   F +L+  K  + +I+K++          T    ++YD F   LPENDCRYAVYDF++   + + +++KI F  WSP  + +RAKM+YA+SKD   R L GI  EIQ TD +E+  E + ++
Sbjct:    4 SGVAVSDEALKAFNDLKLGKKFKSIIYKLNDAKTEIVVDSTS-TEDAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYESVLEK 135          
The following BLAST results are available for this feature:
BLAST of FC924898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ACTP_ACACA9.604e-2439.85Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
ADF11_ARATH8.130e-2340.88Putative actin-depolymerizing factor 11 OS=Arabido... [more]
COFI_ZYGRO6.883e-2239.26Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_YARLI6.883e-2241.48Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
COFI_DEBHA2.002e-2137.78Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_CANGA2.615e-2140.00Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_YEAST5.826e-2137.04Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_ASHGO1.695e-2038.52Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
COFI_KLULA2.214e-2037.04Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_PICAN2.892e-2039.10Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YL10FM1 TF Citrus clementina cDNA clone KN0AAP1YL10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924898 ID=FC924898; Name=FC924898; organism=Citrus clementina; type=EST; length=642bp
CTTCTGGCATGGGTGTCGCTGATCAAAGCTAGACCACATTCCTTGAACTG
CAAAGGAAGAAGGTGCACCGCTATGTGATTTTCAAGATCGATGAGAAGAA
AAAAGAGGTTGTGGTCGAAAAAACTGGGGGCCCAGCTGAGAGCTATGATG
ATTTCACTGCTTCTTTGCCAGAGAATGATTGTCGATATGCAGTTTATGAC
TTTGACTTTGTGACTTCTGAGAACTGCCAGAAGAGCAAGATATTTTTTAT
TGCATGGTCTCCTTCTGTATCCAGGATCCGTGCCAAGATGCTGTATGCAA
CATCAAAGGATAGGTTCACAAGGGAGCTGGAGGGCATCCATTATGAGATC
CAGGCAACTGACCCCACTGAGATGGATCTTGAAGTCCTTAGGGACCGTGC
TAACTGAGCACTTAGAGAAACACCCAGGAGTGACCAAAAGAAACGCATTT
TCCTGCTTCAATTAGTTGCTGATTATGTGCACTATCTGTTACTGACACAA
CATACCCATATAACACCTGAGAAGCATCATGGCAATAAGGGAGCCCAAAA
TTCCCCTGTACTGGGTATCATACCACGAGCCCCTAATCAGCCTTCCCAGG
TGCCAATTATTTAATAGTTAAGCTCCTCGTGCCGAATTCCTG
back to top