FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_MAGSA (60 kDa chaperonin OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=groL PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 6.515e-30
Identity = 73/197 (37.06%), Postives = 116/197 (58.88%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLE--YDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+ K++ +T  +  I  GSG++  I+ RC+Q+   +E +TSDY+ + L+ERL  L+  VA++KVGG +  E                  +EEGI+PGGGVALLHA + LE L + N  +++G+ +++ A++ P+  IA  AG   +VV   +G E+ DL   +D     Y D +K+ I+D P K+++  L DA S
Sbjct:  316 MLGTSKRITITKEDTTIVDGSGDKGAIDARCKQIRAQVEETTSDYDREKLQERLAKLAGGVAVIKVGGGSEIEVKERKDRVDDALHATRAAVEEGIVPGGGVALLHAVKALEGLASGNADQEVGISIVRRALQAPVRQIAENAGHDGAVVAGKIG-ESKDLSFGFDAQTGIYTDMIKAGIID-PTKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 6.515e-30
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_MOOTA (60 kDa chaperonin 1 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.105e-29
Identity = 71/195 (36.41%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKVK+   +  I  G G +  ++ R  Q+   IE + SDY+ + L+ERL  L+  VA+++VG AT  E                  +EEGI+PGGG  L+HA   +EK+ A    E +GV++++ A++ PL  IA+ AG + SV+ + +  E P + +D  ++EYVD +K+ IVD P K+ ++ L +A S
Sbjct:  315 MLGRAKKVKIAKEKTTIVEGYGKKEAVDGRIAQIKKQIEETDSDYDREKLQERLAKLAGGVAVIRVGAATETELKEKKHRVEDALAATRAAVEEGIVPGGGATLVHAIPAVEKIQAEG-DEAVGVRIVRRALEEPLRQIAANAGLEGSVIVERVRSEQPGIGFDAVKEEYVDMIKAGIVD-PAKVTRSALQNAAS 507          

HSP 2 Score: 23.8682 bits (50), Expect = 1.105e-29
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 2
Query:   59 NCELV----YEENCKAIMRDIAILTG 124
            NC  V    + +  KA+M DIAILTG
Sbjct:  271 NCAAVKAPGFGDRRKAMMEDIAILTG 296          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CAEEL (Chaperonin homolog Hsp-60, mitochondrial OS=Caenorhabditis elegans GN=hsp-60 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.459e-29
Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDA 740
            LG   +V +T ++ ++  G G+Q  IE R E ++D IE STSDYE + L ERL  LS  VA+LK+GG +  E                  +EEGI+PGGGVALL +   L+   A N  ++IGV +++ A+  P+ TI   AG +  S+++++ G  N    YD    ++VD  ++ I+D P K+++  L DA
Sbjct:  333 LGEVDEVTITKDDTLLLRGRGDQTEIEKRIEHITDEIEQSTSDYEKEKLNERLAKLSKGVAVLKIGGGSEVEVGEKKDRVTDALCATRAAVEEGIVPGGGVALLRSLTALKNYKAANEDQQIGVNIVKKALTQPIATIVKNAGLEPSSIIDEVTGNSNTSYGYDALNGKFVDMFEAGIID-PTKVVRTALQDA 524          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CAUSK (60 kDa chaperonin OS=Caulobacter sp. (strain K31) GN=groL PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.380e-29
Identity = 72/196 (36.73%), Postives = 111/196 (56.63%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +T ++  I  G G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGG+T  E                  +EEGI+PGGGVALL AS+ L  L   N  +  G+ +++ A++ P+  IA  AG + S VV K+L  ++P   ++   ++YVD +   ++D P K+++  L DA S
Sbjct:  316 MLGKAKKVSITKDDTTIVDGVGEKTAIEARIGQIKKQIEDTTSDYDKEKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLKASKALATLVGDNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDSPTFGFNAQTEQYVDLIADGVID-PAKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 5.380e-29
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_RHOP2 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.005e-29
Identity = 76/196 (38.78%), Postives = 111/196 (56.63%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +V IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+++   N  +K GV++++ A+  P   IA  AG   SV V K+L ++  +  +D    EY D VK  I+D P K+++  + +A S
Sbjct:  316 MLGRAKKVMIDKENTTIVNGAGKKVDIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKTANDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKVLEKDQYNYGFDSQTGEYGDMVKKGIID-PTKVVRAAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 7.005e-29
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_RHOPS (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.005e-29
Identity = 75/196 (38.27%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+++   N  +K GV++++ A+  P   IA  AG   SV V K+L ++  +  +D    EY D VK  I+D P K+++  + +A S
Sbjct:  316 MLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKTQNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKVLEKDQYNYGFDSQTGEYGDLVKKGIID-PTKVVRTAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 7.005e-29
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_RHOPA (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris GN=groL2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 9.120e-29
Identity = 77/196 (39.29%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+ L   N  +K GV++++ A+  P   IA  AG   SV V K+L +E     +D    EY D VK  I+D P K+++  + +A S
Sbjct:  316 MLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGLKTKNDDQKTGVEIVRRALSAPARQIAINAGEDGSVIVGKVLEKEQYAFGFDSQSGEYGDLVKKGIID-PTKVVRTAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 9.120e-29
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_AZOC5 (60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 9.121e-29
Identity = 77/196 (39.29%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL A + LE L   N  +K G+ +++ A++ P   I + AG   S VV K+L  E     Y+    EYVD V S I+D P K+++  L DA S
Sbjct:  316 MLGRAKKVVIEKENTTIVDGNGEKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAIKVLEGLKVENTDQKTGIDIVRRAIQAPARQIVANAGDDGSVVVGKILENETYTFGYNAQTGEYVDMVASGIID-PAKVVRTALQDAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 9.121e-29
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PARL1 (60 kDa chaperonin OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=groL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.006e-28
Identity = 74/196 (37.76%), Postives = 113/196 (57.65%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  K+V +T ++  I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA++KVGGAT AE                  +EEGI+PGGG ALL AS+ + KL   N   + G+ +++ A++ P+  I   AG + S VV+K+L  +  +  +D  ++EY D V + I+D P K+++  L DA S
Sbjct:  315 MLGKAKRVSITKDDTTIVDGAGKKKDIEARVAQIKRQIEDTTSDYDKEKLQERLAKLAGGVAVIKVGGATEAEVKERKDRVDDALNATRAAVEEGIVPGGGTALLMASKAVGKLVEDNRDIQAGINIIRRALEAPIRQIVENAGVEGSIVVQKVLESKQANFGFDAQKEEYCDLVAAGIID-PTKVVRTALQDAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICAH (60 kDa chaperonin OS=Rickettsia akari (strain Hartford) GN=groL PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.187e-28
Identity = 76/195 (38.97%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V V+    +I  GSG++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L KL   N  ++ G++++  A+K PL  I   AG     VV KLL   + +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGTAKRVTVSKENTVIVDGSGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQTLTKLKVENKDQQAGIEIVIEALKDPLKQIIENAGENGGVVVGKLLEHNDKNYGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 510          

HSP 2 Score: 20.7866 bits (42), Expect = 1.187e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_MAGSA6.515e-3037.0660 kDa chaperonin OS=Magnetospirillum magneticum (... [more]
CH601_MOOTA1.105e-2936.4160 kDa chaperonin 1 OS=Moorella thermoacetica (str... [more]
CH60_CAEEL3.459e-2936.79Chaperonin homolog Hsp-60, mitochondrial OS=Caenor... [more]
CH60_CAUSK5.380e-2936.7360 kDa chaperonin OS=Caulobacter sp. (strain K31) ... [more]
CH602_RHOP27.005e-2938.7860 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_RHOPS7.005e-2938.2760 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH602_RHOPA9.120e-2939.2960 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_AZOC59.121e-2939.2960 kDa chaperonin 2 OS=Azorhizobium caulinodans (s... [more]
CH60_PARL11.006e-2837.7660 kDa chaperonin OS=Parvibaculum lavamentivorans ... [more]
CH60_RICAH1.187e-2838.9760 kDa chaperonin OS=Rickettsia akari (strain Hart... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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