FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.782e-26
Identity = 66/195 (33.85%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  +KV+   ++  I GG GN+  IE R  Q+   +E + S+++ + L+ERL  L+  VA++KVG AT  E                  +EEGI+PGGGVALL   + L+ +   N  E+IGV++++ ++ +PL  IA+ AG + S++ + + + +  + YD   D +V+  ++ IVD P K+ ++ L +A S
Sbjct:  316 MLGRAEKVRANKDKTTIIGGKGNKKDIEARIAQIKKQLEETDSEFDREKLQERLAKLAGGVAVIKVGAATEVELKEKKHRIEDALSATKAAVEEGIVPGGGVALLRTIKALDDVKVDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDGPMGYDAANDRFVNMFEAGIVD-PAKVTRSALQNAAS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 1.782e-26
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RAT (60 kDa heat shock protein, mitochondrial OS=Rattus norvegicus GN=Hspd1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.098e-26
Identity = 65/192 (33.85%), Postives = 113/192 (58.85%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDA 740
            LG   +V VT ++ ++  G G++ +IE R +++++ ++++TS+YE + L ERL  LS  VA+LKVGG +  E                  +EEGI+ GGG ALL     L+ L   N  +KIG+++++ A+K+P  TIA  AG + S++ + + Q + ++ YD    ++V+ V+  I+D P K+++  L DA
Sbjct:  342 LGKVGEVIVTKDDAMLLKGKGDKAHIEKRIQEITEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPANEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKILQSSSEVGYDAMLGDFVNMVEKGIID-PTKVVRTALLDA 532          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_ORITI (60 kDa chaperonin OS=Orientia tsutsugamushi (strain Ikeda) GN=groL PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.098e-26
Identity = 72/198 (36.36%), Postives = 112/198 (56.57%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEM-IIHGGSGNQVY--IEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQEN-PDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+  +V VT +   I+H  + + +   +  RCEQ+ +AI+ +TSDYE + L+ERL  L + VA+LKVGGAT  E                  +EEGI+PGGGVAL +AS  L+ L   N  +++G+ +++  ++ P+  I   AG +  VV   L + N  +  +D    +YVD +K+ IVD P K+++  L DA S
Sbjct:  317 LGTANRVIVTKDHTTIVHDKNNSDIEKKVNSRCEQIREAIKDTTSDYEKEKLQERLAKLRNGVAVLKVGGATEVEQKERKDRVEDALHATRAAVEEGIVPGGGVALFYASRVLDSLKFDNEDQRVGINIIKKVLEAPVRQIVKNAGGKEDVVVNELSKSNDKNRGFDARTMQYVDMIKAGIVD-PTKVVRTALQDAFS 513          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_ORITB (60 kDa chaperonin OS=Orientia tsutsugamushi (strain Boryong) GN=groL PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.098e-26
Identity = 72/198 (36.36%), Postives = 112/198 (56.57%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEM-IIHGGSGNQVY--IEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQEN-PDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+  +V VT +   I+H  + + +   +  RCEQ+ +AI+ +TSDYE + L+ERL  L + VA+LKVGGAT  E                  +EEGI+PGGGVAL +AS  L+ L   N  +++G+ +++  ++ P+  I   AG +  VV   L + N  +  +D    +YVD +K+ IVD P K+++  L DA S
Sbjct:  317 LGTANRVIVTKDHTTIVHDKNNSDIEKKVNSRCEQIREAIKDTTSDYEKEKLQERLAKLRNGVAVLKVGGATEVEQKERKDRVEDALHATRAAVEEGIVPGGGVALFYASRVLDSLKFDNEDQRVGINIIKKVLEAPVRQIVKNAGGKEDVVVNELSKSNDKNRGFDARTMQYVDMIKAGIVD-PTKVVRTALQDAFS 513          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_MOUSE (60 kDa heat shock protein, mitochondrial OS=Mus musculus GN=Hspd1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.098e-26
Identity = 65/192 (33.85%), Postives = 113/192 (58.85%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDA 740
            LG   +V VT ++ ++  G G++ +IE R +++++ ++++TS+YE + L ERL  LS  VA+LKVGG +  E                  +EEGI+ GGG ALL     L+ L   N  +KIG+++++ A+K+P  TIA  AG + S++ + + Q + ++ YD    ++V+ V+  I+D P K+++  L DA
Sbjct:  342 LGKVGEVIVTKDDAMLLKGKGDKAHIEKRIQEITEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPANEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKILQSSSEVGYDAMLGDFVNMVEKGIID-PTKVVRTALLDA 532          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CRIGR (60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.098e-26
Identity = 66/192 (34.38%), Postives = 111/192 (57.81%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDA 740
            LG   +V VT ++ ++  G G +  IE R +++++ +E++TS+YE + L ERL  LS  VA+LKVGG +  E                  +EEGI+ GGG ALL     L+ L   N  +KIG+++++ A+K+P  TIA  AG + S++ + + Q + ++ YD    ++V+ V+  I+D P K+++  L DA
Sbjct:  342 LGKVGEVIVTKDDAMLLKGKGEKAQIEKRIQEITEQLEITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPSNEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKILQSSSEIGYDAMLGDFVNMVEKGIID-PTKVVRTALLDA 532          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_BRASB (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.319e-26
Identity = 70/196 (35.71%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL A + + ++   N   + G+ ++  A++ P+  IA  AG + S VV K+L +++    +D   ++YVD V   I+D P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRITNPNSDVQAGINIVLKALEAPVRQIAENAGVEGSLVVGKILEEKSETFGFDAQSEDYVDMVAKGIID-PAKVVRTALQDASS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 2.319e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.319e-26
Identity = 67/196 (34.18%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+ KK+++T +E  I  G+G +  IE R  Q+   IE +TSDY+ + L+ER+  L+  VA+++VGG T  E                  ++EG+I GGGVAL+ A + LE L  +N  +  G+ +++ A++ PL  IA  AG   +VV  K+   E+ +  ++   +EY D     ++D P K+ +  L+DA S
Sbjct:  316 MLGTAKKIQITKDETTIVDGAGEKAEIEARVAQIRAQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGVIVGGGVALVQAGKSLEGLTGVNADQNAGIAIVRRALEAPLRQIAENAGVDGAVVAGKIRESEDKNFGFNAQTEEYGDMFSFGVID-PAKVTRTALEDAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 2.319e-26
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_ALTMD (60 kDa chaperonin OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.319e-26
Identity = 69/194 (35.57%), Postives = 107/194 (55.15%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V +  +   +  G+G+Q  IE RC Q+   IE S+SDY+ + L+ERL  LS  VA++KVG AT  E                  +EEG++PGGGVAL+ A+ +L +L   N  + +GVKL   A++ PL  I+  +G + SVV   +   + +  Y+   D Y D ++  I+D P K+ ++ L  A S
Sbjct:  317 LGTAKRVVINKDNTTVVDGNGDQEAIEGRCAQIKGQIEESSSDYDKEKLQERLAKLSGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVPGGGVALVRAAAKLSELTGDNEDQTVGVKLALRAMEAPLRQISINSGAEASVVVNEVKNGDGNYGYNAGNDTYGDMLEMGILD-PTKVTRSALQFASS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 2.319e-26
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_SYNAS (60 kDa chaperonin 1 OS=Syntrophus aciditrophicus (strain SB) GN=groL1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.319e-26
Identity = 69/196 (35.20%), Postives = 114/196 (58.16%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNI--GEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+CK++ +T +   I  G+G+Q  IE R +Q+   IE +TSDY+ + L+ERL  L   VA++KVG AT  E                  +EEGI+PGGGVALL     L  L  M++   E+ G+ +++ AV+ P+  IA+ AGF+ S+V + + +   +  ++   ++YVD +++ I+D P K+++  L +A S
Sbjct:  317 LGTCKRLHITKDNTTIVDGAGSQADIEGRVKQIRTQIEETTSDYDREKLQERLAKLVGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRT---LPALAGMDLPDDERPGLNIVKRAVEEPMRQIAANAGFEGSIVVEKVKENTGNFGFNADTEKYVDMMEAGIID-PTKVVRFALQNAAS 508          

HSP 2 Score: 21.9422 bits (45), Expect = 2.319e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DICT61.782e-2633.8560 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH60_RAT2.098e-2633.8560 kDa heat shock protein, mitochondrial OS=Rattus... [more]
CH60_ORITI2.098e-2636.3660 kDa chaperonin OS=Orientia tsutsugamushi (strai... [more]
CH60_ORITB2.098e-2636.3660 kDa chaperonin OS=Orientia tsutsugamushi (strai... [more]
CH60_MOUSE2.098e-2633.8560 kDa heat shock protein, mitochondrial OS=Mus mu... [more]
CH60_CRIGR2.098e-2634.3860 kDa heat shock protein, mitochondrial OS=Cricet... [more]
CH601_BRASB2.319e-2635.7160 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH60_SILST2.319e-2634.1860 kDa chaperonin OS=Silicibacter sp. (strain TM10... [more]
CH60_ALTMD2.319e-2635.5760 kDa chaperonin OS=Alteromonas macleodii (strain... [more]
CH601_SYNAS2.319e-2635.2060 kDa chaperonin 1 OS=Syntrophus aciditrophicus (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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