FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_WOLWR (60 kDa chaperonin OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.740e-26
Identity = 68/195 (34.87%), Postives = 109/195 (55.90%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K VK+T +   +   + +   ++ R EQ+   IE STSDY+ + L ERL  LS  VA+LKVGGAT  E                  +EEGI+PGGGVALL+AS  L+KL   +  E+IG+ +++  +  P+  +   AG + +V ++ L+ Q + +L Y+     Y +A  + ++D P K+++   + AVS
Sbjct:  320 LGTAKNVKITKDNTTVVSENSDSDSVKARIEQIKSQIETSTSDYDKEKLRERLAKLSGGVAVLKVGGATEVEVKERRDRVEDALHATRAAIEEGIVPGGGVALLYASSVLDKLKGASDEEQIGINIIKKVLSAPIRRLVKNAGLESAVIIDYLIKQNDKELIYNVEAMNYANAFTAGVID-PAKVVRIAFETAVS 513          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_WOLPM (60 kDa chaperonin OS=Wolbachia pipientis wMel GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.740e-26
Identity = 68/195 (34.87%), Postives = 109/195 (55.90%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K VK+T +   +   + +   ++ R EQ+   IE STSDY+ + L ERL  LS  VA+LKVGGAT  E                  +EEGI+PGGGVALL+AS  L+KL   +  E+IG+ +++  +  P+  +   AG + +V ++ L+ Q + +L Y+     Y +A  + ++D P K+++   + AVS
Sbjct:  320 LGTAKNVKITKDNTTVVSENSDSDSVKARIEQIKSQIETSTSDYDKEKLRERLAKLSGGVAVLKVGGATEVEVKERRDRVEDALHATRAAIEEGIVPGGGVALLYASSVLDKLKGASDEEQIGINIIKKVLSAPIRRLVKNAGLESAVIIDYLIKQNDKELIYNVEAMNYANAFTAGVID-PAKVVRIAFETAVS 513          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_NOVAD (60 kDa chaperonin OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.740e-26
Identity = 70/196 (35.71%), Postives = 111/196 (56.63%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLE-YDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +  +   I  G+G+   I+ R EQ+   IE++TSDY+ + L+ERL  L+  VA++KVGGAT  E                  +EEGI+PGGG ALL+A++ LE L   N  +  G+ +++ A++ P+  IA+ AG   +VV   L +EN + + ++   D Y +   + ++D P K+++  L DA S
Sbjct:  316 MLGQAKKVTIDKDNTTIVDGAGSAEEIKARVEQIRAQIEVTTSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALLYATKALEGLKGANDDQTKGIDIVRRAIQAPIRQIAANAGHDGAVVSGNLLRENDENQGFNAATDTYENLKAAGVID-PTKVVRTALQDAAS 510          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CAUCR (60 kDa chaperonin OS=Caulobacter crescentus GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.018e-26
Identity = 69/196 (35.20%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +T ++  I  G G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGG+T  E                   +EGI+PGGG ALL AS+ L  +   N  +  G+ +++ A++ P+  IA  AG + S VV K+L  +N    ++   ++YVD V   ++D P K+++  L +A S
Sbjct:  316 MLGRAKKVSITKDDTTIVDGVGEKADIEARIAQIKRQIEDTTSDYDKEKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAADEGIVPGGGTALLKASKALAGVVGDNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDNSAFGFNAQTEQYVDLVVDGVID-PAKVVRTALQNAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 3.018e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CAUCN (60 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groL PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.018e-26
Identity = 69/196 (35.20%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +T ++  I  G G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGG+T  E                   +EGI+PGGG ALL AS+ L  +   N  +  G+ +++ A++ P+  IA  AG + S VV K+L  +N    ++   ++YVD V   ++D P K+++  L +A S
Sbjct:  316 MLGRAKKVSITKDDTTIVDGVGEKADIEARIAQIKRQIEDTTSDYDKEKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAADEGIVPGGGTALLKASKALAGVVGDNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDNSAFGFNAQTEQYVDLVVDGVID-PAKVVRTALQNAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 3.018e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CHRVI (60 kDa chaperonin OS=Chromatium vinosum GN=groL PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.018e-26
Identity = 66/194 (34.02%), Postives = 110/194 (56.70%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V+V  +E  I  GSG+++ I+ RCEQ+   +E ++SDY+ + L+ERL  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   ++ L   N  + +G+ + + A++ PL  I + AG + SV+   + +   +  Y+    EY D V+  I+D P K+ ++ L ++ S
Sbjct:  317 LGTAKRVQVGKDETTIIDGSGSEIDIKARCEQIRAQVEETSSDYDREKLQERLAKLAGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVEEGIVPGGGVALVRAIAAVKDLKGANHDQDVGIAIARRAMEEPLRQIVANAGEEPSVILHKVAEGTGNFGYNAANGEYGDMVEMGILD-PTKVTRSALQNSCS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 3.018e-26
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CLOBO (60 kDa chaperonin OS=Clostridium botulinum GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.018e-26
Identity = 72/197 (36.55%), Postives = 114/197 (57.87%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLL-GQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+ + +KVT     I  G G++  IEDR  Q+   IE +TS+++ + L+ERL  ++  VA++KVG AT  E                  +EEGI+ GGG A L A +E+EKL   N   ++G+ +++ A++ P+  IAS AG + SV ++K++ GQE   + +D    EYV+ V+  IVD P K+ ++ L +A S
Sbjct:  314 MLGTAESIKVTKENTTIVNGKGSKAEIEDRIGQIKRQIEETTSEFDKEKLQERLAKIAGGVAVVKVGAATETELKERKLRIEDALAATKAAVEEGIVAGGGTAYLRAIKEVEKLTDNNSEIRLGIAIIRRALEEPVRQIASNAGLEGSVIIDKIMNGQEG--MGFDALEGEYVNMVQKGIVD-PAKVTRSALQNAAS 507          

HSP 2 Score: 21.9422 bits (45), Expect = 3.018e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            K ++RDIAILTG
Sbjct:  284 KEMLRDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.018e-26
Identity = 68/194 (35.05%), Postives = 110/194 (56.70%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG   KV+V   E II GG+G+   I  R  Q+   IE +TS+++ + L+ERL  L+  VA+++VG AT  E                  +EEGI+PGGGVA + A + L+ L A ++ EK G+ +++ A++ PL  IAS AG + SV+ + +   +P + ++    E+V+ + + IVD P K+ +  L +A S
Sbjct:  316 LGRANKVRVKKEETIIVGGAGSTDEITKRVAQIKKQIEETTSEFDKEKLQERLAKLAGGVAVIQVGAATETEMKDKKLRIEDALNATRAAVEEGIVPGGGVAYISALKGLDGLDAGSLDEKTGIDIVRRALEEPLRQIASNAGLEGSVIVEKVKNADPGIGFNALTGEFVNMIDAGIVD-PAKVTRTALQNAAS 508          

HSP 2 Score: 22.3274 bits (46), Expect = 3.018e-26
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  285 KAMLQDIAILTG 296          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: HSP60_YEAST (Heat shock protein 60, mitochondrial OS=Saccharomyces cerevisiae GN=HSP60 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.579e-26
Identity = 70/196 (35.71%), Postives = 113/196 (57.65%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSD-YEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLE--YDPPRDEYVDAVKSAIVDPPLKLIKNELDDA 740
            LGSC  + VT  + +I  GSG +  I++R EQ+  +I+++T++ YE + L+ERL  LS  VA+++VGGA+  E                  +EEGI+PGGG AL+ AS  L+++   N  +K+GV +++ A+  P   I   AG + SV + KL+ +   D    YD  + EY D + + I+D P K++++ L DA
Sbjct:  338 LGSCDSITVTKEDTVILNGSGPKEAIQERIEQIKGSIDITTTNSYEKEKLQERLAKLSGGVAVIRVGGASEVEVGEKKDRYDDALNATRAAVEEGILPGGGTALVKASRVLDEVVVDNFDQKLGVDIIRKAITRPAKQIIENAGEEGSVIIGKLIDEYGDDFAKGYDASKSEYTDMLATGIID-PFKVVRSGLVDA 532          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_LACF3 (60 kDa chaperonin OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=groL PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.579e-26
Identity = 70/195 (35.90%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIG-EKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS  KV +T +   I  GSGN+  I +R +Q+  AI  +TSD++ + L+ERL  L+  VA++KVG AT  E                  ++EG +PGGG AL++    L+++ A   G E  G+K+++ A++ P+  IA  AG + SV+   L QE P + Y+   D++ D V + IVD P K+ ++ L +A S
Sbjct:  315 LGSANKVTITKDATTIVDGSGNKEAIAERVDQIKKAIAETTSDFDKEKLQERLAKLAGGVAVVKVGAATETELKEKKYRIEDALNATRAAVQEGFVPGGGTALVNVIPALDEVEASATGDEATGIKIVKAALEAPVRQIAENAGLEGSVIVNQLKQEKPGVGYNAADDKFEDMVAAGIVD-PTKVTRSALQNAAS 508          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_WOLWR2.740e-2634.8760 kDa chaperonin OS=Wolbachia sp. subsp. Drosophi... [more]
CH60_WOLPM2.740e-2634.8760 kDa chaperonin OS=Wolbachia pipientis wMel GN=g... [more]
CH60_NOVAD2.740e-2635.7160 kDa chaperonin OS=Novosphingobium aromaticivora... [more]
CH60_CAUCR3.018e-2635.2060 kDa chaperonin OS=Caulobacter crescentus GN=gro... [more]
CH60_CAUCN3.018e-2635.2060 kDa chaperonin OS=Caulobacter crescentus (strai... [more]
CH60_CHRVI3.018e-2634.0260 kDa chaperonin OS=Chromatium vinosum GN=groL PE... [more]
CH60_CLOBO3.018e-2636.5560 kDa chaperonin OS=Clostridium botulinum GN=groL... [more]
CH60_PELTS3.018e-2635.0560 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]
HSP60_YEAST3.579e-2635.71Heat shock protein 60, mitochondrial OS=Saccharomy... [more]
CH60_LACF33.579e-2635.9060 kDa chaperonin OS=Lactobacillus fermentum (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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