FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_DROME (60 kDa heat shock protein, mitochondrial OS=Drosophila melanogaster GN=Hsp60 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 3.579e-26
Identity = 66/192 (34.38%), Postives = 109/192 (56.77%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDA 740
            LG   +V +T ++ ++  G G +  +  R  Q+ D IE +TS+YE + L+ERL  L+S VA+L+VGG++  E                  +EEGI+PGGG ALL   E+LE +   N  +K+GV++++ A++MP  TIA  AG   ++V   +  +  D  YD  + EY + ++  I+D P K+++  + DA
Sbjct:  338 LGQVGEVVITKDDTLLLKGKGKKDDVLRRANQIKDQIEDTTSEYEKEKLQERLARLASGVALLRVGGSSEVEVNEKKDRVHDALNATRAAVEEGIVPGGGTALLRCIEKLEGVETTNEDQKLGVEIVRRALRMPCMTIAKNAGVDGAMVVAKVENQAGDYGYDALKGEYGNLIEKGIID-PTKVVRTAITDA 528          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_SHEPC (60 kDa chaperonin OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=groL PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.928e-26
Identity = 64/180 (35.56%), Postives = 99/180 (55.00%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDP 704
            LG+ K+V +T +   I  G+G Q  IE R  Q+   IE STSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++PGGGVAL+  + ++ +L  +N  +K GV +   A++ PL  IA+ AG + SVV   +   + +  Y+   D Y D ++  I+DP
Sbjct:  317 LGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIAELEVLNEDQKHGVVIALRAMEAPLRQIATNAGEEASVVANTVKNGSGNFGYNAGNDTYGDMLEMGILDP 496          

HSP 2 Score: 21.9422 bits (45), Expect = 3.928e-26
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++D+AILTG
Sbjct:  286 KAMLQDVAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH605_SINMW (60 kDa chaperonin 5 OS=Sinorhizobium medicae (strain WSM419) GN=groL5 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.928e-26
Identity = 71/196 (36.22%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +T     I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL +S ++  +   N  +  GV +++ A++ P   I   AG + S VV K+L ++  D  Y+    EY D +   I+D P+K+++  L DA S
Sbjct:  316 MLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKI-TVKGENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIID-PVKVVRTALQDAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 3.928e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_SINMW (60 kDa chaperonin 1 OS=Sinorhizobium medicae (strain WSM419) GN=groL1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.928e-26
Identity = 71/196 (36.22%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +T     I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL +S ++  +   N  +  GV +++ A++ P   I   AG + S VV K+L ++  D  Y+    EY D +   I+D P+K+++  L DA S
Sbjct:  316 MLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKI-TVKGENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIID-PVKVVRTALQDAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 3.928e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.929e-26
Identity = 69/196 (35.20%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +  +   I  G G +  I+ R  Q+   I+ +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGG+ALL A + L+ L A N  ++ G+ +++ A++ P   IA  AG   + +V KLL   + +  ++    EY D VK+ ++D P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKDNTTIVDGVGARTDIDARIAQIRQQIDTTTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRAAVEEGILPGGGIALLRALKALDGLKAANDDQQSGIDIVRRALRAPARQIADNAGEDGAWIVGKLLESSDYNWGFNAATGEYEDLVKAGVID-PAKVVRTALQDAAS 510          

HSP 2 Score: 23.483 bits (49), Expect = 3.929e-26
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:   89 KAIMRDIAILTGRN 130
            KA++ DIAILTG N
Sbjct:  286 KAMLEDIAILTGGN 299          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.929e-26
Identity = 70/196 (35.71%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEK-LPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG    V+V  +E II GG G+   I+ R  Q+   IE +TS+YE + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGV LL + + +EK L  ++  EKIG +++  A+  P+  IA  AG+  +V +EK+L  ++P   +D  R E+ +  +  I+D P K+ ++ L +A S
Sbjct:  315 LGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRSRKAVEKLLEELDGDEKIGAQIVYKALSAPIRQIAENAGYDGAVIIEKILASDDPAYGFDALRGEFGNMFEKGIID-PAKVTRSALQNAAS 509          

HSP 2 Score: 23.483 bits (49), Expect = 3.929e-26
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + E  KA+++DIAILTG
Sbjct:  279 FGERRKAMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CLOTE (60 kDa chaperonin OS=Clostridium tetani GN=groL PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.674e-26
Identity = 69/195 (35.38%), Postives = 108/195 (55.38%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  + VK+T     I  G GN+  IEDR  Q+   IE +TS+++ + L+ERL  L+  VA++KVG AT  E                  +EEGIIPGGG A     +E+EKL +     K+G+ +++ +++ P+  IA  AG + S+V + +      + YD   +EYV+ +K+ IVD P K+ ++ L +A S
Sbjct:  316 MLGRAESVKITKETTTIVNGKGNKKEIEDRVNQIKAQIEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALAATKAAVEEGIIPGGGTAYAMVIKEVEKLNSETHDIKLGIDIVKKSLEEPVRQIACNAGVEGSIVIEKVKHSEAGIGYDALNNEYVNMIKAGIVD-PTKVSRSALQNAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_MARMM (60 kDa chaperonin OS=Maricaulis maris (strain MCS10) GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.112e-26
Identity = 70/196 (35.71%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLGS K+V +T ++  I  G G++  IE R  Q+    E +TSDY+ + L+ERL  L+  VA++KVGGAT  E                  +EEGI+PGGGVALL AS +L  L   N  +  G+ ++  A++ P+  IA+ +G + S VV K++   +    ++   +EY D +   ++D P K+++  L DA S
Sbjct:  316 MLGSAKRVNITKDDTTIVDGVGDKAQIEARVTQIRRQSEETTSDYDREKLQERLAKLAGGVAVIKVGGATEIEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLKASAKLAGLEGDNADQTQGIAIVARALQSPIRQIATNSGVEGSIVVGKVMENPSATFGFNAQTEEYGDMLAFGVID-PAKVVRTALQDAAS 510          

HSP 2 Score: 21.1718 bits (43), Expect = 5.112e-26
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ D+AILTG
Sbjct:  286 KAMLEDLAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH603_RHILO (60 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.112e-26
Identity = 70/196 (35.71%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV ++     I  G+G +  I+ R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL AS  +  + A N  +  G+ +++ A++ P   IA+ AG + S+V  K+L  +     ++    EY D +   IVD P+K+++  L DA S
Sbjct:  316 MLGRAKKVSISKENTTIVDGAGKKEEIQGRVAQIKQQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLRASLSINAVGA-NSDQTAGISIVRRALQAPARQIAANAGAEASIVAGKILENKGATFGFNAQTGEYGDMIAMGIVD-PVKVVRTALQDAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 5.112e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_BURMS (60 kDa chaperonin OS=Burkholderia mallei (strain SAVP1) GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.112e-26
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G  V IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   +  L  +N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EYVD V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASLTGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 5.112e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DROME3.579e-2634.3860 kDa heat shock protein, mitochondrial OS=Drosop... [more]
CH60_SHEPC3.928e-2635.5660 kDa chaperonin OS=Shewanella putrefaciens (stra... [more]
CH605_SINMW3.928e-2636.2260 kDa chaperonin 5 OS=Sinorhizobium medicae (stra... [more]
CH601_SINMW3.928e-2636.2260 kDa chaperonin 1 OS=Sinorhizobium medicae (stra... [more]
CH602_SPHAL3.929e-2635.2060 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=... [more]
CH60_THENE3.929e-2635.7160 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH60_CLOTE4.674e-2635.3860 kDa chaperonin OS=Clostridium tetani GN=groL PE... [more]
CH60_MARMM5.112e-2635.7160 kDa chaperonin OS=Maricaulis maris (strain MCS1... [more]
CH603_RHILO5.112e-2635.7160 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=... [more]
CH60_BURMS5.112e-2634.5460 kDa chaperonin OS=Burkholderia mallei (strain S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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