FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_BURMA (60 kDa chaperonin OS=Burkholderia mallei GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.112e-26
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G  V IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   +  L  +N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EYVD V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASLTGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 5.112e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_BURM9 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10229) GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.112e-26
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G  V IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   +  L  +N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EYVD V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASLTGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 5.112e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_BURM7 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10247) GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.112e-26
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G  V IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   +  L  +N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EYVD V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASLTGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 5.112e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_SHESW (60 kDa chaperonin OS=Shewanella sp. (strain W3-18-1) GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.113e-26
Identity = 64/180 (35.56%), Postives = 99/180 (55.00%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDP 704
            LG+ K+V +T +   I  G+G Q  IE R  Q+   IE STSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++PGGGVAL+  + ++ +L  +N  +K GV +   A++ PL  IA+ AG + SVV   +   + +  Y+   D Y D ++  I+DP
Sbjct:  317 LGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIAELEVLNEDQKHGVVIALRAMEAPLRQIATNAGEEASVVANTVKNGSGNYGYNAGNDTYGDMLEMGILDP 496          

HSP 2 Score: 21.9422 bits (45), Expect = 5.113e-26
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++D+AILTG
Sbjct:  286 KAMLQDVAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH603_NITHX (60 kDa chaperonin 3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.113e-26
Identity = 70/196 (35.71%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGG ALL A + + ++   N   + G+ ++  A++ P+  IA  AG + S VV K+L  +     +D  ++EYVD V   I+D P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVNGAGKKKDIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKEKKDRVEDALNATRAAVQEGIVPGGGTALLRAKKAVGRIANDNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKVLENKTETFGFDAQKEEYVDMVAKGIID-PAKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 5.113e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_BURP1 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 1710b) GN=groL1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.113e-26
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G  V IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   +  L  +N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EYVD V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASLTGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 5.113e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_BURP0 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 1106a) GN=groL1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.113e-26
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G  V IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   +  L  +N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EYVD V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASLTGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 5.113e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH607_BRAJA (60 kDa chaperonin 7 OS=Bradyrhizobium japonicum GN=groL7 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.113e-26
Identity = 70/196 (35.71%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL A + + +L   N   + G+ ++  A++ P+  I+  AG + S VV K+L  ++    +D   ++YVD V+  I+D P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVNGAGKKPDIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRLTNANDDVQAGINIVLKALEAPIRQISENAGVEGSIVVGKILENKSETFGFDAQNEDYVDMVEKGIID-PAKVVRTALQDASS 510          

HSP 2 Score: 21.1718 bits (43), Expect = 5.113e-26
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ D+AILTG
Sbjct:  286 KAMLEDLAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CHLPN (60 kDa chaperonin OS=Chlamydia pneumoniae GN=groL PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.113e-26
Identity = 73/197 (37.06%), Postives = 106/197 (53.81%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAM--NIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV VT  +  I  G GN+  I+ RC+ +   IE STSDY+ + L+ERL  LS  VA+++VG AT  E                  +EEGI+PGGG AL+     LE    M  N  E IG +++  A+  PL  IAS AG + +++ + +   + +  YD  RD Y D + + I+D P K+ ++ L+ A S
Sbjct:  316 MLGKAKKVIVTKEDTTIVEGLGNKPDIQARCDNIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALVRCIPTLEAFLPMLANEDEAIGTRIILKALTAPLKQIASNAGKEGAIICQQVLARSANEGYDALRDAYTDMIDAGILD-PTKVTRSALESAAS 511          

HSP 2 Score: 21.9422 bits (45), Expect = 5.113e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH603_BURCM (60 kDa chaperonin 3 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.114e-26
Identity = 70/194 (36.08%), Postives = 106/194 (54.64%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS K+V+V   + II  G+G+Q  IE R + +   I+ +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVALL A      L   N  +  G++++  A++ PL  IAS AG + SVV   + +   +  Y+    EY D V++ +VD P K+ +  L +A S
Sbjct:  317 LGSAKRVEVRKEDTIIIDGAGDQERIEARVKSIRTQIDETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSTATSLKGANSDQDAGIQIVLRALEAPLRVIASNAGDEPSVVIAKVLEGKGNFGYNAATGEYGDLVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 5.114e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BURMA5.112e-2634.5460 kDa chaperonin OS=Burkholderia mallei GN=groL P... [more]
CH60_BURM95.112e-2634.5460 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BURM75.112e-2634.5460 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_SHESW5.113e-2635.5660 kDa chaperonin OS=Shewanella sp. (strain W3-18-... [more]
CH603_NITHX5.113e-2635.7160 kDa chaperonin 3 OS=Nitrobacter hamburgensis (s... [more]
CH601_BURP15.113e-2634.5460 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH601_BURP05.113e-2634.5460 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH607_BRAJA5.113e-2635.7160 kDa chaperonin 7 OS=Bradyrhizobium japonicum GN... [more]
CH60_CHLPN5.113e-2637.0660 kDa chaperonin OS=Chlamydia pneumoniae GN=groL ... [more]
CH603_BURCM5.114e-2636.0860 kDa chaperonin 3 OS=Burkholderia ambifaria (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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