FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_BURTH (60 kDa chaperonin OS=Burkholderia thailandensis GN=groL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.654e-26
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G  V IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   +  L  +N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EYVD V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIAALTGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 6.654e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH604_RHIME (60 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.654e-26
Identity = 71/196 (36.22%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +T     I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL +S ++  +   N  +  GV +++ A++ P   I   AG + S VV K+L +   D  Y+    EY D +   I+D P+K+++  L DA S
Sbjct:  316 MLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKI-TVKGENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIID-PVKVVRTALQDAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 6.654e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_RHIME (60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.654e-26
Identity = 71/196 (36.22%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +T     I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL +S ++  +   N  +  GV +++ A++ P   I   AG + S VV K+L +   D  Y+    EY D +   I+D P+K+++  L DA S
Sbjct:  316 MLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKI-TVKGENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIID-PVKVVRTALQDAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 6.654e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_BURTA (60 kDa chaperonin 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=groL1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.654e-26
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G  V IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   +  L  +N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EYVD V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIAALTGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 6.654e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CHLMU (60 kDa chaperonin OS=Chlamydia muridarum GN=groL PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 6.655e-26
Identity = 70/197 (35.53%), Postives = 107/197 (54.31%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAM--NIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV V+  +  I  G G +  ++ RCE +   IE STSDY+ + L+ERL  LS  VA+++VG AT  E                  +EEGI+PGGG AL+     LE    M  N  E+IG +++  A+  PL  IA+ AG + +++ + +   + +  YD  RD Y D +++ I+D P K+ ++ L+ A S
Sbjct:  316 MLGKAKKVIVSKEDTTIVEGMGEKEALDARCESIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDERIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMIEAGILD-PAKVTRSALESAAS 511          

HSP 2 Score: 21.9422 bits (45), Expect = 6.655e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH605_RHIME (60 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.655e-26
Identity = 70/196 (35.71%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G++  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGG+T  E                  +EEGI+PGGGVALL A + L+ L   N  +++GV L++ A++ P+  IA  AG + S +V KL  +      ++   +EY D     ++D P K+++  L DA S
Sbjct:  316 MLGRAKKVSIEKENTTIIDGAGSKADIEGRTAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDGLKTANNDQRVGVDLVRRAIEAPVRQIAENAGAEGSIIVGKLREKTEFSYGWNAQTNEYGDLYAMGVID-PAKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 6.655e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.656e-26
Identity = 68/196 (34.69%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEK-LPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG    V+V  ++ II GG GN   I+ R  Q+   IE +TS+YE + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGV L+ + + +E  L  ++  EK+G  ++  A++ P+  IA  AG+  +V +EK+L  +     +D  + EY D  K+ I+D P K+ ++ L +A S
Sbjct:  315 LGRADIVRVKKDDTIIIGGKGNPEEIKKRIAQIKSQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLIRSRKAVEDVLKELDGDEKVGAMIVYKALEAPIRQIAENAGYDGAVIIEKILASKEESYGFDALKGEYTDMFKAGIID-PAKVTRSALQNAAS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 6.656e-26
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  284 KAMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_ORITS (60 kDa chaperonin OS=Orientia tsutsugamushi GN=groL PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26
Identity = 71/198 (35.86%), Postives = 112/198 (56.57%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEM-IIHGGSGNQVY--IEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+  +V VT +   I+H  + + +   +  RCEQ+ +AI+ +TSDYE + L+ERL  L + VA+LKVGGAT  E                  +EEGI+PGGGVAL +AS  L+ L   N  +++G+ +++  ++ P+  I   AG +   VV +L    + +  +D    +YVD +K+ IVD P K+++  L DA S
Sbjct:  317 LGTANRVIVTKDHTTIVHDKNNSDIEKKVNSRCEQIREAIKDTTSDYEKEKLQERLAKLRNGVAVLKVGGATEVEQKERKDRVEDALHATRAAVEEGIVPGGGVALFYASRVLDSLKFDNEDQRVGINIIKKVLEAPVRQIVKNAGGKEDVVVNELSKSTDKNRGFDARTMQYVDMIKAGIVD-PTKVVRTALQDAFS 513          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_EUGGR (Chaperonin CPN60, mitochondrial OS=Euglena gracilis GN=HSP60 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26
Identity = 72/199 (36.18%), Postives = 110/199 (55.28%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKL---PAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV-EKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            +LG  KKV V  ++ II  G+G+   +E+R E +   +  + S YE + L ERL  LS  VA++KVGGA+  E                  + EGI+PGGG ALL+AS  L +L   P +   +K GV+++  A+K+P  TI   AG + +VV  +LL ++     YD  + +YV+  ++ I+D P K++K  L DA S
Sbjct:  330 ILGFAKKVSVGKDQTIILNGAGDPKAVEERKELIQGMLGKTDSSYEKEKLNERLAKLSGGVAVIKVGGASDVEVGEKKDRVTDALNATRAAVSEGIVPGGGAALLYASSALAELAADPTLTEDQKTGVRIVMSAIKLPAITIVKNAGGEGAVVIHQLLAEKKMQQGYDAQQGKYVNMFEAGIID-PAKVVKTALVDAAS 527          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_RHOPA (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris GN=groL1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.661e-26
Identity = 70/196 (35.71%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE ++SDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL A + + ++   N   + G+ ++  A++ P+  IA  AG + S VV K+L  +     +D   +EYVD +   IVD P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVNGAGKKPEIEARVSQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRISNDNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKTETFGFDAQTEEYVDMLAKGIVD-PAKVVRTALQDASS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 8.661e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BURTH6.654e-2634.5460 kDa chaperonin OS=Burkholderia thailandensis GN... [more]
CH604_RHIME6.654e-2636.2260 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4... [more]
CH601_RHIME6.654e-2636.2260 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1... [more]
CH601_BURTA6.654e-2634.5460 kDa chaperonin 1 OS=Burkholderia thailandensis ... [more]
CH60_CHLMU6.655e-2635.5360 kDa chaperonin OS=Chlamydia muridarum GN=groL P... [more]
CH605_RHIME6.655e-2635.7160 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5... [more]
CH60_THELT6.656e-2634.6960 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH60_ORITS7.973e-2635.8660 kDa chaperonin OS=Orientia tsutsugamushi GN=gro... [more]
CH60_EUGGR7.973e-2636.18Chaperonin CPN60, mitochondrial OS=Euglena gracili... [more]
CH601_RHOPA8.661e-2635.7160 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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