FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_BURPS (60 kDa chaperonin 1 OS=Burkholderia pseudomallei GN=groL1 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.661e-26
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G  V IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   +  L  +N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EYVD V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIAGLTGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 8.661e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_BURP6 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 668) GN=groL1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.661e-26
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G  V IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+ A   +  L  +N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EYVD V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIAGLTGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 8.661e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH603_SINMW (60 kDa chaperonin 3 OS=Sinorhizobium medicae (strain WSM419) GN=groL3 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.662e-26
Identity = 67/196 (34.18%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G++  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGG+T  E                  +EEGI+PGGG+ALL A   L+ L   N  +++G+++++ A++ P+  IA  AG + S +V KL  +      ++   +EY D     ++D P+K+++  L DA S
Sbjct:  316 MLGRAKKVSIEKENTTIIDGAGSKTEIEGRTAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGIALLRAVNALDGLKTANDDQRVGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKVEFSYGWNAQTNEYGDLYTMGVID-PVKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 8.662e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THEAB (60 kDa chaperonin OS=Thermosipho africanus (strain TCF52B) GN=groL PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.663e-26
Identity = 69/196 (35.20%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEK-LPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG    V+V  +E II GG G+Q  I+ R  Q+   IE +TS+YE + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGG+ LL A + +EK +  ++  EKIG K++  A+  P+  IA  AG+    ++ K+L  ++P   +D  + EY +  +  I+D P K+ ++ L +A S
Sbjct:  315 LGRADVVRVKKDETIIVGGHGDQEEIKKRIAQIKAQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKAVEKVVNELDGDEKIGAKIVYEALIAPINQIAKNAGYDGAIIIHKVLENDDPAYGFDALKGEYCNMFERGIID-PAKVTRSALQNAAS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 8.663e-26
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  284 KAMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.041e-25
Identity = 67/195 (34.36%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  + VKV+ +  ++  G GN   I+DR  Q+   IE ++S+++ + L+ERL  L+  VA++KVG AT  E                  +EEGI+PGGG A ++  +E+EKL +     ++G+K++  +++ PL  IAS AG + SV+ + +        YD    +YV+ +KS IVD P K+ ++ L +A S
Sbjct:  314 MLGQAESVKVSKDNTVVVNGKGNPENIKDRISQIKAQIEETSSEFDKEKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALAATKAAVEEGIVPGGGTAYINVIKEVEKLTSDVQDTELGIKIIVKSLEEPLRQIASNAGVEGSVIIEKVKNSEVGTGYDALYGKYVNMIKSGIVD-PTKVTRSALQNAAS 507          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH604_BURXL (60 kDa chaperonin 4 OS=Burkholderia xenovorans (strain LB400) GN=groL4 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.127e-25
Identity = 66/194 (34.02%), Postives = 104/194 (53.61%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      +  G+G+   IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVGGAT  E                  +EEGI+PGGGVAL+   + +  L   N  +  G+K++  A++ PL  I + AG + SVV   + Q   +  Y+    EY D V+S ++D P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTVIDGAGDSKNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGGATEIEVKEKKDRVDDALHATRAAVEEGIVPGGGVALIRVKQAISGLKGANADQDAGIKIVLRALEEPLRQIVTNAGEEASVVVAKVAQGTGNFGYNAQTGEYGDLVQSGVLD-PTKVTRTALQNASS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 1.127e-25
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KALLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CHLFF (60 kDa chaperonin OS=Chlamydophila felis (strain Fe/C-56) GN=groL PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.127e-25
Identity = 73/197 (37.06%), Postives = 109/197 (55.33%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEK-LPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV V+  +  I  G GN+  IE RCE +   IE STSDY+ + L+ERL  LS  VA+++VG AT  E                  +EEGI+PGGG AL+     LE  +P + N  E+IG +++  A+  PL  IA+ AG + +++ + +   + +  YD  RD Y D +++ I+D P K+ +  L+ A S
Sbjct:  316 MLGKAKKVIVSKEDTTIVEGLGNKEDIEARCENIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATLAAVEEGILPGGGTALVRCIPTLEAFIPILTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLARSSNEGYDALRDAYTDMIEAGILD-PTKVTRCALESAAS 511          

HSP 2 Score: 21.9422 bits (45), Expect = 1.127e-25
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_TRYBB (Chaperonin HSP60, mitochondrial OS=Trypanosoma brucei brucei GN=HSP60 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.360e-25
Identity = 67/199 (33.67%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKL---PAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            +LGS KK  +T ++ ++  G G+   +++R + +   IE  TSDY  + L+ERL  LS  VA+++VGGA+  E                  ++EGI+PGGG ALL AS+ L+ L    ++   ++ GV+++++AV++P + I + AG +   VVEK+L   +  + YD   D YV+  ++ I+D P ++++  L DA S
Sbjct:  326 ILGSVKKATITKDDTVLLNGGGDVAMMKERVDLVRGLIERETSDYNREKLQERLAKLSGGVAVIRVGGASEVEVNEKKDRITDALCSTRAAVQEGIVPGGGPALLRASKALDGLLQDQSLTADQRTGVQIIRNAVRLPAHRIVANAGREGAVVVEKVLENTDAAVGYDAQLDRYVNMFEAGIID-PARVVRVALTDAAS 523          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_HUMAN (60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.360e-25
Identity = 65/195 (33.33%), Postives = 111/195 (56.92%), Query Frame = 3
Query:  156 PLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDA 740
            P  LG   +V VT ++ ++  G G++  IE R +++ + ++++TS+YE + L ERL  LS  VA+LKVGG +  E                  +EEGI+ GGG ALL     L+ L   N  +KIG+++++  +K+P  TIA  AG + S++ + + Q + ++ YD    ++V+ V+  I+D P K+++  L DA
Sbjct:  339 PHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEVGYDAMAGDFVNMVEKGIID-PTKVVRTALLDA 532          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_ERYLH (60 kDa chaperonin 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.360e-25
Identity = 67/196 (34.18%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  K+V +  +   I  G+G++  I+ R  ++   I+ +TSDY+ + L+ERL  L+  VA++KVGGA+  E                  +EEGI+PGGG ALL+A++ LE L   N  +  G+ +++ A+  P+  IA+ AG   +V+   LL ++N    ++   D Y D VK+ ++D P K+++  L DA S
Sbjct:  316 MLGEAKRVTIDKDNTTIVDGAGDEADIKARVNEIRTQIDNTTSDYDREKLQERLAKLAGGVAVIKVGGASEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALLYATKVLEGLKGENDDQTRGIDIVRKAIVAPVRQIATNAGHDGAVISGNLLREDNESQGFNAATDTYEDLVKAGVID-PTKVVRVALQDAAS 510          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_BURPS8.661e-2634.5460 kDa chaperonin 1 OS=Burkholderia pseudomallei G... [more]
CH601_BURP68.661e-2634.5460 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH603_SINMW8.662e-2634.1860 kDa chaperonin 3 OS=Sinorhizobium medicae (stra... [more]
CH60_THEAB8.663e-2635.2060 kDa chaperonin OS=Thermosipho africanus (strain... [more]
CH60_CLOBB1.041e-2534.3660 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH604_BURXL1.127e-2534.0260 kDa chaperonin 4 OS=Burkholderia xenovorans (st... [more]
CH60_CHLFF1.127e-2537.0660 kDa chaperonin OS=Chlamydophila felis (strain F... [more]
CH60_TRYBB1.360e-2533.67Chaperonin HSP60, mitochondrial OS=Trypanosoma bru... [more]
CH60_HUMAN1.360e-2533.3360 kDa heat shock protein, mitochondrial OS=Homo s... [more]
CH602_ERYLH1.360e-2534.1860 kDa chaperonin 2 OS=Erythrobacter litoralis (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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