FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.546e-28
Identity = 75/196 (38.27%), Postives = 109/196 (55.61%), Query Frame = 3 
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+++   N  +K GV++++ A+  P   IA  AG   SV V K+L ++     +D    EY D VK  I+D P K+++  + +A S
Sbjct:  316 MLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEQLKRIKTQNDDQKTGVEIVRKALSWPARQIAINAGEDGSVIVGKILEKDQYSYGFDSQSGEYGDMVKKGIID-PTKVVRAAIQNAAS 510

HSP 2 Score: 22.3274 bits (46), Expect = 1.546e-28
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_RHORT (60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.546e-28
Identity = 73/196 (37.24%), Postives = 111/196 (56.63%), Query Frame = 3 
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+ K V +T +   I  G+G +  I+ RC Q+   IE +TSDY+ + L+ERL  LS  VA+++VGGA+  E                  +EEGII GGGVALLHA++ L+ L   N  +K+G+++++ A++ P+  IA  AG   +VV  KLL   + D  Y+     Y + VK  ++D P K+++  L  A S
Sbjct:  316 MLGTAKTVTITKDNTTIVDGAGVKADIDARCAQIRATIEDTTSDYDREKLQERLAKLSGGVAVIRVGGASEVEVKEKKDRVDDAMHATRAAVEEGIIAGGGVALLHAAKALDALSPANADQKVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLESSDADFGYNAQTGVYENLVKVGVID-PTKVVRTALQGAAS 510

HSP 2 Score: 21.9422 bits (45), Expect = 1.546e-28
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.716e-28
Identity = 70/196 (35.71%), Postives = 114/196 (58.16%), Query Frame = 3 
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLGS K+V +T     I  G+G+Q  I+DR E +   IE +TSDY+ + L+ER+  L+  VA++KVGGAT  E                  ++EGI+PGGG ALL+A++ LE L  +N  ++ G+ +++ A++ P+  IA  AGF  +VV  KL+   +  + ++   ++Y D   + ++D P K+++  L DA S
Sbjct:  316 MLGSAKRVSITKENTTIVDGAGDQSTIKDRVEAIRSQIEATTSDYDREKLQERVAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVQEGIVPGGGTALLYATKTLEGLNGVNEDQQRGIDIVRRALQAPVRQIAQNAGFDGAVVAGKLIDGNDDKIGFNAQTEKYEDLAATGVID-PTKVVRTALQDAAS 510
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_TRYCR (Chaperonin HSP60, mitochondrial OS=Trypanosoma cruzi GN=HSP60 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.716e-28
Identity = 71/201 (35.32%), Postives = 117/201 (58.21%), Query Frame = 3 
Query:  156 PLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKL---PAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            P +LG+ KK  +T ++ ++  G G    +++R E L   I+  TSDY  + L+ERL  LS  VA++KVGG +  E                  ++EGI+PGGGVALL AS+ L+ L    ++   ++ GV+++++AV++P +TI   AG +   VVEK+L   +  + YD  RD YV+  ++ I+D P ++++  + DAVS
Sbjct:  324 PAILGTVKKATITKDDTVLLNGGGESSMVKERVELLRGLIDGETSDYNREKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRITDALCSTRAAVQEGIVPGGGVALLRASKALDSLLGDSSLTADQRTGVQIIRNAVRLPAHTIVLNAGKEGAVVVEKVLENNDVTVGYDAQRDRYVNMFEAGIID-PARVVRVAITDAVS 523
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RHOCS (60 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groL PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.716e-28
Identity = 75/196 (38.27%), Postives = 114/196 (58.16%), Query Frame = 3 
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +T +   I  G+G++  I+ R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+ GGGVALL+A++ L+KL A+N  +K G+ +++ A++ P+  IA  AGF  SV V KLL +   +  ++    EY D  K  ++D P K+++  L DA S
Sbjct:  316 MLGQAKKVVITKDNTTIVDGAGSKEDIQARIVQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVAGGGVALLYATKALDKLTAVNEDQKFGIDIVRKALQAPVRQIAQNAGFDGSVIVGKLLEKGETNFGFNAQAGEYGDMFKFGVID-PTKVVRAALQDAAS 510
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICCN (60 kDa chaperonin OS=Rickettsia conorii GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.012e-28
Identity = 74/195 (37.95%), Postives = 111/195 (56.92%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V ++    +I  G+G++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L KL   N  ++ G++++  A+K PL  I   AG     VV KLL  ++ +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 510

HSP 2 Score: 20.7866 bits (42), Expect = 2.012e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2 
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICRS (60 kDa chaperonin OS=Rickettsia rickettsii (strain Sheila Smith) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.012e-28
Identity = 74/195 (37.95%), Postives = 111/195 (56.92%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V ++    +I  G+G++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L KL   N  ++ G++++  A+K PL  I   AG     VV KLL  ++ +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 510

HSP 2 Score: 20.7866 bits (42), Expect = 2.012e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2 
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICRO (60 kDa chaperonin OS=Rickettsia rickettsii (strain Iowa) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.012e-28
Identity = 74/195 (37.95%), Postives = 111/195 (56.92%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V ++    +I  G+G++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L KL   N  ++ G++++  A+K PL  I   AG     VV KLL  ++ +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 510

HSP 2 Score: 20.7866 bits (42), Expect = 2.012e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2 
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICPU (60 kDa chaperonin OS=Rickettsia peacockii (strain Rustic) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.012e-28
Identity = 74/195 (37.95%), Postives = 111/195 (56.92%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V ++    +I  G+G++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L KL   N  ++ G++++  A+K PL  I   AG     VV KLL  ++ +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 510

HSP 2 Score: 20.7866 bits (42), Expect = 2.012e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2 
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICM5 (60 kDa chaperonin OS=Rickettsia massiliae (strain Mtu5) GN=groL PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.012e-28
Identity = 74/195 (37.95%), Postives = 111/195 (56.92%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V ++    +I  G+G++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L KL   N  ++ G++++  A+K PL  I   AG     VV KLL  ++ +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 510

HSP 2 Score: 20.7866 bits (42), Expect = 2.012e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2 
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_RHOPB1.546e-2838.2760 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_RHORT1.546e-2837.2460 kDa chaperonin 1 OS=Rhodospirillum rubrum (stra... [more]
CH60_ZYMMO1.716e-2835.7160 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]
CH60_TRYCR1.716e-2835.32Chaperonin HSP60, mitochondrial OS=Trypanosoma cru... [more]
CH60_RHOCS1.716e-2838.2760 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH60_RICCN2.012e-2837.9560 kDa chaperonin OS=Rickettsia conorii GN=groL PE... [more]
CH60_RICRS2.012e-2837.9560 kDa chaperonin OS=Rickettsia rickettsii (strain... [more]
CH60_RICRO2.012e-2837.9560 kDa chaperonin OS=Rickettsia rickettsii (strain... [more]
CH60_RICPU2.012e-2837.9560 kDa chaperonin OS=Rickettsia peacockii (strain ... [more]
CH60_RICM52.012e-2837.9560 kDa chaperonin OS=Rickettsia massiliae (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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