FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICAE (60 kDa chaperonin OS=Rickettsia africae (strain ESF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.012e-28
Identity = 74/195 (37.95%), Postives = 111/195 (56.92%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V ++    +I  G+G++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L KL   N  ++ G++++  A+K PL  I   AG     VV KLL  ++ +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIID-PAKVVRTALQDATS 510          

HSP 2 Score: 20.7866 bits (42), Expect = 2.012e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_NITHX (60 kDa chaperonin 1 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.012e-28
Identity = 73/196 (37.24%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+++   N  +K GV++++ A+  P   IA  AG   S +V K+L +E     +D    EYV+ +   I+D P K+++  + +A S
Sbjct:  316 MLGRAKKVMIDKENTTIVSGAGKKADIEARVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKTANDDQKTGVEIVRKALSAPARQIAINAGEDGSIIVGKILEKEQYSYGFDSQTGEYVNLISKGIID-PTKVVRAAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 2.012e-28
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICTY (60 kDa chaperonin OS=Rickettsia typhi GN=groL PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.620e-28
Identity = 74/195 (37.95%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V ++    +I  G+G++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L KL   N  ++ G++++  A+K PL  I   AG     VV KLL   + +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQTLTKLKVENKDQQAGIEIVIEALKDPLKQIVKNAGENGGVVVGKLLEHNDKNYGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 510          

HSP 2 Score: 20.7866 bits (42), Expect = 2.620e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICPR (60 kDa chaperonin OS=Rickettsia prowazekii GN=groL PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.620e-28
Identity = 74/195 (37.95%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V ++    +I  G+G++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L KL   N  ++ G++++  A+K PL  I   AG     VV KLL   + +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQTLTKLKVENKDQQAGIEIVIEALKDPLKQIVKNAGENGGVVVGKLLEHNDKNYGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 510          

HSP 2 Score: 20.7866 bits (42), Expect = 2.620e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_FLAPJ (60 kDa chaperonin OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=groL PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.620e-28
Identity = 72/195 (36.92%), Postives = 108/195 (55.38%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+ K+V +  +   I  G+G    I++R  Q+   +E STSDY+ + L+ERL  L+  VA+L VG A+  E                  +EEGI+ GGGVALL A   L+ + A N  E  G++++  AV+ PL TI   AG + SVV   + + + D  Y+   DEYVD +K+ I+DP  K+ +  L++A S
Sbjct:  316 MLGTAKRVTIDKDNTTIVSGAGEADMIKNRVNQIKGQMEASTSDYDKEKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALLRAKNVLKDIKADNADEATGIQIVSRAVEAPLRTIVENAGLEGSVVVAKVAEGSGDFGYNAKTDEYVDMLKAGIIDPK-KVTRVALENAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 2.620e-28
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THETN (60 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.620e-28
Identity = 75/197 (38.07%), Postives = 113/197 (57.36%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGE-KIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  ++VKVT     I GG+GN   I+ R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VG AT  E                  +EEGI+PGGGVALL+  E+++K+     G+ K G K++  A++ P+  IA  AG   S +VEK+   ++P+  YD  R+E+ D +K  I+D P K+ +  L +A S
Sbjct:  314 MLGRARQVKVTKEHTTIVGGAGNPEDIKKRINQIKAQIEETTSDYDREKLQERLAKLAGGVAVIQVGAATETELKEKKHRIEDALAATKAAVEEGIVPGGGVALLNVIEDVQKVVDSLEGDFKTGAKIVLKALEAPVRQIAENAGVDGSIIVEKIKAAKDPNFGYDAYREEFTDMIKRGIID-PTKVTRTALQNAAS 509          

HSP 2 Score: 20.4014 bits (41), Expect = 2.620e-28
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            K +++DIAILTG
Sbjct:  284 KEMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH603_RHILE (60 kDa chaperonin 3 OS=Rhizobium leguminosarum GN=groL3 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.928e-28
Identity = 75/196 (38.27%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  K+V +      I  GSG +  I+ R +Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL A   L  L   N     G+ ++  A++ P+  IA  AGF+ S VV KL G  N +  +D   + YVD +++ IVD P K+++  L DA S
Sbjct:  316 MLGHAKRVLIDKESTTIIDGSGEKAAIQARIQQIKAQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGATETEVKEKKDRIDDALNATRAAVEEGIVPGGGVALLRAKSALTGLTGENADVTAGISIVLRALEAPIRQIADNAGFEGSIVVGKLAGSNNHNQGFDAQTETYVDMIEAGIVD-PAKVVRTALQDAGS 510          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_DICDI (60 kDa heat shock protein, mitochondrial OS=Dictyostelium discoideum GN=hspA PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.523e-28
Identity = 83/255 (32.55%), Postives = 141/255 (55.29%), Query Frame = 3
Query:    9 LSNLLYLKKVGRQSMEKIANWF--MKKIAKQSCGTLPFSQVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV-EKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LS L++ K  G Q     A  F  +K++  Q    +  +QV+   S  L + L      MLGS KK+ + ++  II  G+G++  I++R E + +++  +TSDY+   LE RL  +   VA+++VGGA+  E                  +EEGI+PGGG ALL+++  L+K+   N  + IGVK+++ A+ +P  TIA+ AG + SVV  +LL + + +  Y+  +  Y + +++ I+D P K+++  L DA S
Sbjct:  276 LSALIFNKMRGLQVCAVKAPGFGDLKRVNLQDIAVISGAQVI---SEELGVRLEDVDITMLGSAKKITIDSDSTIILDGAGDKAAIQERVELIRESLTRTTSDYDKTQLETRLAKIGGGVAVIRVGGASEVEVGEKKDRITDALNATKAAVEEGIVPGGGTALLYSTLALKKIKMDNFDQTIGVKIVRDALLIPCKTIANNAGVEGSVVIGRLLSKRDFEYGYNAQKGVYENMIQAGIID-PTKVVRTALIDAAS 526          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.523e-28
Identity = 79/199 (39.70%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV-EKL--LGQE-NPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  +KV V      I GG G+   I+ R EQ+   I+ +TSDY+ + L+ERL  LS  VAI++VG AT AE                  +EEGI+PGGGVAL+ ASE LE L   N  +++G+ +++ AV+ PL  IA  AG+  SVV EK+  LG+E      ++    EYVD  ++ I+D P K+++  +++A S
Sbjct:  316 MLGQAEKVVVDKEHTTIIGGKGDPEQIKARIEQIKRQIQETTSDYDREKLQERLAKLSGGVAIIRVGAATEAELKEKKYRVEDAVHATKAAVEEGIVPGGGVALVRASEALEDLKGDNHDQQLGIDIIKKAVRTPLKQIAYNAGYDGSVVLEKVIELGKEKGVSWGFNAATGEYVDMYEAGIID-PTKVVRTAIENAAS 513          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICFE (60 kDa chaperonin OS=Rickettsia felis GN=groL PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.525e-28
Identity = 73/195 (37.44%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V ++    +I  G+G++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L  L   N  ++ G++++  A+K PL  I   AG     VV KLL  ++ +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  316 LGTAKRVTISKENTVIVDGNGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQTLRNLKVDNKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 509          

HSP 2 Score: 20.7866 bits (42), Expect = 7.525e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  285 KAMMEDIAILT 295          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_RICAE2.012e-2837.9560 kDa chaperonin OS=Rickettsia africae (strain ES... [more]
CH601_NITHX2.012e-2837.2460 kDa chaperonin 1 OS=Nitrobacter hamburgensis (s... [more]
CH60_RICTY2.620e-2837.9560 kDa chaperonin OS=Rickettsia typhi GN=groL PE=3... [more]
CH60_RICPR2.620e-2837.9560 kDa chaperonin OS=Rickettsia prowazekii GN=groL... [more]
CH60_FLAPJ2.620e-2836.9260 kDa chaperonin OS=Flavobacterium psychrophilum ... [more]
CH60_THETN2.620e-2838.0760 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]
CH603_RHILE2.928e-2838.2760 kDa chaperonin 3 OS=Rhizobium leguminosarum GN=... [more]
CH60_DICDI6.523e-2832.5560 kDa heat shock protein, mitochondrial OS=Dictyo... [more]
CH60_AQUAE6.523e-2839.7060 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH60_RICFE7.525e-2837.4460 kDa chaperonin OS=Rickettsia felis GN=groL PE=3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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