FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.795e-28
Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  I  RC Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGA+  E                  +EEGI+PGGGVAL  AS  + KL A N  ++ G+ +++ AV  P+  IA  AG   +V+  K+L  ++    +D    E+ D VK+ I+D P K+++  L DA S
Sbjct:  316 MLGRAKKVLIEKENTTIVEGAGKKADITGRCNQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGASETEVKERKDRVDDALHATRAAVEEGIVPGGGVALARASLAINKLKADNDDQRFGIDIIRKAVLAPMRQIAENAGEDGAVISGKVLDNDDYSFGFDAQSGEFKDMVKAGIID-PTKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 9.795e-28
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_RHORT (60 kDa chaperonin 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.795e-28
Identity = 70/196 (35.71%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+ KKV +T  E  +  G+G++  IE RC Q+   IE ++SDY+ + L+ERL  L+  VA++KVGGAT  E                  +EEG++ GGGVALLHA   L+ +   N  + +G+++++ A++ P+  IA  AG   +VV  KLL   + D  Y+     Y + V + ++D P K+++  L  A S
Sbjct:  316 MLGTAKKVTITKEETTLVDGAGDKKDIEARCSQIRANIEDTSSDYDREKLQERLAKLAGGVAVIKVGGATETEVKEKKDRVDDAMHATRAAVEEGVVAGGGVALLHAIRSLDSVKGANPDQNVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLENSDTDFGYNAQTGIYENLVTAGVID-PTKVVRAALQGAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 9.795e-28
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICCK (60 kDa chaperonin OS=Rickettsia canadensis (strain McKiel) GN=groL PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.796e-28
Identity = 73/195 (37.44%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V ++    +I  GSG++  IEDR  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLH S+ L KL   N  ++ G++++  A+K PL  I   AG     VV KLL  ++ +  ++    +YVD +++ I+D P K+++  L DA S
Sbjct:  317 LGTAKRVTISKENTVIVDGSGDKKSIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHTSQILTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNFGFNAQDMQYVDMIQAGIID-PAKVVRTALQDAAS 510          

HSP 2 Score: 20.7866 bits (42), Expect = 9.796e-28
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH604_BRASB (60 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL4 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.796e-28
Identity = 75/196 (38.27%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+ L   N  +K GV++++ A+  P   IA  AG   SV V K+L +E     +D    +YV+ V   I+D P K+++  + +A S
Sbjct:  316 MLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEQLKGLRTKNEDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYAYGFDSQTGDYVNMVSKGIID-PTKVVRTAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 9.796e-28
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_NITHX (60 kDa chaperonin 2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.796e-28
Identity = 73/196 (37.24%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+++   N  +K GV++++ A+  P   IA  AG   SV V K+L +E     +D    EY + +   I+D P K+++  + +A S
Sbjct:  316 MLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKTANDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQSGEYGNLISKGIID-PTKVVRAAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 9.796e-28
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_FLAJ1 (60 kDa chaperonin OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.797e-28
Identity = 71/195 (36.41%), Postives = 107/195 (54.87%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+ K+V +  +   I  G+G    I++R  Q+   +E +TSDY+ + L+ERL  L+  VA+L VG A+  E                  +EEGI+ GGGVALL A   L  L A N  E  G++++  A++ PL TI   AG + SVV   + + + D  Y+   DEYVD +K+ I+DP  K+ +  L++A S
Sbjct:  316 MLGNAKRVSIDKDNTTIVSGAGEADIIKNRVNQIKGQMETTTSDYDKEKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALLRAKLALADLKADNADEATGIQIVSRAIEAPLRTIVENAGLEGSVVVAKVAEGSGDFGYNAKTDEYVDMLKAGIIDPK-KVTRVALENAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 9.797e-28
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_HYDS0 (60 kDa chaperonin OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=groL PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.113e-27
Identity = 75/196 (38.27%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  +KV V      I GG G++  +E R EQ+   I+ +TSDY+ + L+ERL  LS  VAI++VG AT +E                   EEGI+ GGG AL  AS  LE   + N   ++GVK++ +A K PL  IA  AG++ S V+EK+   ++ +  +D    EY D VK+ I+D P K+++  L +A S
Sbjct:  316 MLGQAEKVIVDKENTTIVGGKGDKKKVEARIEQIKKQIKETTSDYDREKLQERLAKLSGGVAIIRVGAATESELKEKKARVEDAVHATKAAAEEGIVAGGGTALAKASRVLENYTSANKDRELGVKIVYNACKYPLKQIAYNAGYEGSLVLEKVYEDQDKNYGFDAANGEYKDMVKAGIID-PTKVVRTALQNAAS 510          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICBR (60 kDa chaperonin OS=Rickettsia bellii (strain RML369-C) GN=groL PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.275e-27
Identity = 73/195 (37.44%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+V ++    +I  GSG++  IE+R  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L+ L   N  ++ G++L+  A+K P+  I   AG     VV KLL  ++ +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGHAKRVTISKENTVIVDGSGDKKNIEERVLQIKSHIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQALKNLKVDNKDQQAGIELVIEALKDPIKQIVENAGENGGVVVGKLLEHKDKNFGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 510          

HSP 2 Score: 20.7866 bits (42), Expect = 1.275e-27
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RICB8 (60 kDa chaperonin OS=Rickettsia bellii (strain OSU 85-389) GN=groL PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.275e-27
Identity = 73/195 (37.44%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+V ++    +I  GSG++  IE+R  Q+   I  +TSDY+ + L+ERL  LS  VA+LKVGGAT  E                  +EEG++ GGGV LLHAS+ L+ L   N  ++ G++L+  A+K P+  I   AG     VV KLL  ++ +  ++    +YVD +K+ I+D P K+++  L DA S
Sbjct:  317 LGHAKRVTISKENTVIVDGSGDKKNIEERVLQIKSHIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQALKNLKVDNKDQQAGIELVIEALKDPIKQIVENAGENGGVVVGKLLEHKDKNFGFNAQDMQYVDMIKAGIID-PAKVVRTALQDAAS 510          

HSP 2 Score: 20.7866 bits (42), Expect = 1.275e-27
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:   89 KAIMRDIAILT 121
            KA+M DIAILT
Sbjct:  286 KAMMEDIAILT 296          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH606_BRAJA (60 kDa chaperonin 6 OS=Bradyrhizobium japonicum GN=groL6 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.275e-27
Identity = 75/196 (38.27%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+ L   N  +K GV++++ A+  P   IA  AG   SV V K+L  +     +D    EYV+ V   I+D P K+++  + +A S
Sbjct:  316 MLGRAKKVMIDKENTTIVNGAGKKADIEARVSQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGLRTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILENKTYAYGFDSQTGEYVNLVTKGIID-PTKVVRTAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 1.275e-27
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ACICJ9.795e-2836.7360 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH602_RHORT9.795e-2835.7160 kDa chaperonin 2 OS=Rhodospirillum rubrum (stra... [more]
CH60_RICCK9.796e-2837.4460 kDa chaperonin OS=Rickettsia canadensis (strain... [more]
CH604_BRASB9.796e-2838.2760 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain ... [more]
CH602_NITHX9.796e-2837.2460 kDa chaperonin 2 OS=Nitrobacter hamburgensis (s... [more]
CH60_FLAJ19.797e-2836.4160 kDa chaperonin OS=Flavobacterium johnsoniae (st... [more]
CH60_HYDS01.113e-2738.2760 kDa chaperonin OS=Hydrogenobaculum sp. (strain ... [more]
CH60_RICBR1.275e-2737.4460 kDa chaperonin OS=Rickettsia bellii (strain RML... [more]
CH60_RICB81.275e-2737.4460 kDa chaperonin OS=Rickettsia bellii (strain OSU... [more]
CH606_BRAJA1.275e-2738.2760 kDa chaperonin 6 OS=Bradyrhizobium japonicum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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