FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RHOCA (60 kDa chaperonin OS=Rhodobacter capsulatus GN=groL PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.159e-23
Identity = 64/196 (32.65%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV ++     I  G G++  I  R   +   IE +TSDY+ + L+ER+  L+  VA+++VGG T  E                  ++EGII GGGVAL+ A+++L  L   N  +  G+ +++ A++ PL  IA  AG   +VV  K+    +P   ++   +EY D     ++D P K+ +  L+DA S
Sbjct:  316 MLGRAKKVTISKENTTIVDGHGDKAEINARVAHIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIIVGGGVALVQAAKKLNDLTGANSDQDAGISIVRRALEAPLRQIAENAGVDGAVVAGKVRESADPAFGFNAQTEEYGDMFGFGVID-PAKVTRTALEDAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 8.159e-23
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_LACRJ (60 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groL PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.160e-23
Identity = 64/194 (32.99%), Postives = 106/194 (54.64%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG   KV VT +   I  G+G++  I++R +Q+   I  STSD++ + L+ERL  LS  VA++KVG AT  E                  ++EG +PGGG AL++    L+K+ A +  E  G+ +++ A++ P+  IA  AG + SV+   L  E   + Y+    ++ D +K+ IVDP + + ++ L +A S
Sbjct:  315 LGQANKVTVTKDTTTIVDGAGSKEAIQERVDQIKQEIAKSTSDFDKEKLQERLAKLSGGVAVVKVGAATETELKEKKYRIEDALNATRAAVQEGFVPGGGTALINVIPALDKIEA-DGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTM-VTRSALQNAAS 506          

HSP 2 Score: 20.4014 bits (41), Expect = 8.160e-23
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA ++DIA+LTG
Sbjct:  284 KAQLQDIAVLTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_LACRD (60 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groL PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.160e-23
Identity = 64/194 (32.99%), Postives = 106/194 (54.64%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG   KV VT +   I  G+G++  I++R +Q+   I  STSD++ + L+ERL  LS  VA++KVG AT  E                  ++EG +PGGG AL++    L+K+ A +  E  G+ +++ A++ P+  IA  AG + SV+   L  E   + Y+    ++ D +K+ IVDP + + ++ L +A S
Sbjct:  315 LGQANKVTVTKDTTTIVDGAGSKEAIQERVDQIKQEIAKSTSDFDKEKLQERLAKLSGGVAVVKVGAATETELKEKKYRIEDALNATRAAVQEGFVPGGGTALINVIPALDKIEA-DGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTM-VTRSALQNAAS 506          

HSP 2 Score: 20.4014 bits (41), Expect = 8.160e-23
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA ++DIA+LTG
Sbjct:  284 KAQLQDIAVLTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CLOCE (60 kDa chaperonin OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.160e-23
Identity = 64/195 (32.82%), Postives = 104/195 (53.33%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIG-EKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  ++V V     II  G+G+   I+ R   +   IE +TSD++ + L+ERL  LS  VA+++VG AT  E                  +EEGI+ GGG A ++   E+ KL     G EK GV+++  A++ P+  IA  AG + SV+ + +      + +D   ++Y+D ++  IVD P K+ ++ L +AVS
Sbjct:  315 LGKARQVIVQKENTIIVDGNGSAEDIKSRINSIKTQIEDTTSDFDREKLQERLAKLSGGVAVIQVGAATETEMKEKKLRIEDALAATRAAVEEGIVAGGGTAFINVIPEVAKLLESTSGDEKTGVQIILRALEEPVRQIAENAGLEGSVIVEKIKTSEKGMGFDALNEKYIDMIEGGIVD-PAKVTRSALQNAVS 508          

HSP 2 Score: 22.3274 bits (46), Expect = 8.160e-23
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  284 KAMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_LACS1 (60 kDa chaperonin OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=groL PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.161e-23
Identity = 65/194 (33.51%), Postives = 107/194 (55.15%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS  KV VT     I  G+G++  I +R EQ+   I  +TSD++ + L+ERL  LS  VA++KVG AT  E                  +EEG +PGGG AL++   ++  L       + G+ +++ A++ P+  IA  AG + SV+ + L ++ P + ++   +E+VD V++ IVD P K+ ++ L +A S
Sbjct:  315 LGSAGKVTVTKENTTIVEGAGDKDKIAERVEQIKKQISETTSDFDREKLQERLAKLSGGVAVIKVGAATETELKERKYRIEDALNATRAAVEEGFVPGGGTALVNVIGKVAALEEEG-DVQTGINIVKRALEEPVRQIAENAGLEGSVIVEKLKEQKPGVGFNAATNEWVDMVEAGIVD-PTKVTRSALQNAAS 506          

HSP 2 Score: 20.4014 bits (41), Expect = 8.161e-23
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIA LTG
Sbjct:  284 KAMLQDIATLTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_THEFY (60 kDa chaperonin 2 OS=Thermobifida fusca (strain YX) GN=groL2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.162e-23
Identity = 64/195 (32.82%), Postives = 102/195 (52.31%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            +LG  +++ VT +   I  G+G+Q  + DR  Q+   IE + SD++ + L+ERL  L+  V +L+VG AT  E                  +EEGII GGG AL+HA++ LE        E  GV +++ A+  P   IA+ AG + +VV   + +  P   Y+    EY D V   I+D P+K+ ++ + +A S
Sbjct:  314 VLGKARRITVTKDTTTIVDGAGDQSEVNDRINQIRKEIEATDSDWDREKLQERLAKLAGGVCVLRVGAATEVELKERKHRLEDAISATRAAVEEGIIAGGGSALVHAAKTLEGDLGRTGDEATGVAIVRRALVAPARWIANNAGAEGNVVVSRIAELEPGHGYNAATGEYGDLVAQGIID-PVKVTRSAVQNAAS 507          

HSP 2 Score: 23.483 bits (49), Expect = 8.162e-23
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + E  KA+++DIAILTG
Sbjct:  279 FGERRKAMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_TREDE (60 kDa chaperonin OS=Treponema denticola GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.251e-23
Identity = 62/197 (31.47%), Postives = 107/197 (54.31%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEK--LPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  K +K+  +  +I  G+G    I+DR  Q+   ++ + S+Y+ + L ERL  LS  VA++K+G  T  E                  +EEGI+ GGG+A++ A   LEK  + ++   EK+G K+++ A++ P+  IA  AG   +V+ +   +E   + +D  + E+ D VK+ I+D P K+ ++ L +A S
Sbjct:  315 MLGQAKSIKIDKDNTMIIDGAGKSKDIKDRVTQIKAQLDATDSEYDSEKLRERLAKLSGGVAVIKIGAVTEVEMKEKKHRVEDALSATRAAIEEGIVAGGGLAMIQAIAALEKADMSSLTEDEKVGFKIVKRALEEPIRQIAENAGLDGAVIAE-KAKEKKGVGFDAAKMEWTDMVKAGIID-PAKVTRSALQNAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PSEE4 (60 kDa chaperonin OS=Pseudomonas entomophila (strain L48) GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.251e-23
Identity = 74/226 (32.74%), Postives = 115/226 (50.88%), Query Frame = 3
Query:   78 KKIAKQSCGTLPFSQVVTAASN-SLYIPLM--LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            +K   Q   TL   QV++     SL    +  LG+ K+V ++     I  G+G    IE R +Q+   IE ++SDY+ + L+ERL  L+  VA++KVG  T  E                  +EEG++PGGGVAL+ A   +  L   N  + +G+ LL+ AV+ PL  I + AG + SVV   + Q + +  Y+    EY D ++  I+D P K+ ++ L  A S
Sbjct:  285 RKAMLQDIATLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADGDIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALAAIADLKGDNEEQNVGIALLRRAVEAPLRQITANAGDEPSVVADKVKQGSGNFGYNAATGEYGDMIEMGILD-PAKVTRSALQAAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_BACFR (60 kDa chaperonin OS=Bacteroides fragilis GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.251e-23
Identity = 65/195 (33.33%), Postives = 104/195 (53.33%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+  KV V+ +   I  G+G +  I++RC+Q+   I  + SDY+ + L+ERL  LS  VA+L VG A+  E                  +EEGI+ GGGVA + A E L+ L   N  E  G+ +++ A++ PL  I + AG + +VV + + +   D  Y+   D Y +   + +VD P K+ +  L++A S
Sbjct:  316 MLGTADKVTVSKDNTTIVNGAGAKENIKERCDQIKAQIAATKSDYDREKLQERLAKLSGGVAVLYVGAASEVEMKEKKDRVDDALRATRAAIEEGIVAGGGVAYIRAIESLDGLKGENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKVSEGKGDFGYNARTDVYENMHAAGVVD-PAKVTRVALENAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_BACFN (60 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.251e-23
Identity = 65/195 (33.33%), Postives = 104/195 (53.33%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+  KV V+ +   I  G+G +  I++RC+Q+   I  + SDY+ + L+ERL  LS  VA+L VG A+  E                  +EEGI+ GGGVA + A E L+ L   N  E  G+ +++ A++ PL  I + AG + +VV + + +   D  Y+   D Y +   + +VD P K+ +  L++A S
Sbjct:  316 MLGTADKVTVSKDNTTIVNGAGAKENIKERCDQIKAQIAATKSDYDREKLQERLAKLSGGVAVLYVGAASEVEMKEKKDRVDDALRATRAAIEEGIVAGGGVAYIRAIESLDGLKGENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKVSEGKGDFGYNARTDVYENMHAAGVVD-PAKVTRVALENAAS 509          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_RHOCA8.159e-2332.6560 kDa chaperonin OS=Rhodobacter capsulatus GN=gro... [more]
CH60_LACRJ8.160e-2332.9960 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_LACRD8.160e-2332.9960 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_CLOCE8.160e-2332.8260 kDa chaperonin OS=Clostridium cellulolyticum (s... [more]
CH60_LACS18.161e-2333.5160 kDa chaperonin OS=Lactobacillus salivarius subs... [more]
CH602_THEFY8.162e-2332.8260 kDa chaperonin 2 OS=Thermobifida fusca (strain ... [more]
CH60_TREDE8.251e-2331.4760 kDa chaperonin OS=Treponema denticola GN=groL P... [more]
CH60_PSEE48.251e-2332.7460 kDa chaperonin OS=Pseudomonas entomophila (stra... [more]
CH60_BACFR8.251e-2333.3360 kDa chaperonin OS=Bacteroides fragilis GN=groL ... [more]
CH60_BACFN8.251e-2333.3360 kDa chaperonin OS=Bacteroides fragilis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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