FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_NITEC (60 kDa chaperonin OS=Nitrosomonas eutropha (strain C91) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.062e-22
Identity = 65/194 (33.51%), Postives = 100/194 (51.55%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+V+V      I  G+G+   IE R  Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVALL   + + K    N  +  G+K++  A++ PL  I +  G + SVV   + +   +  Y+    EY D V   ++D P K+ ++ L +A S
Sbjct:  317 LGQAKRVEVGKENTTIIDGAGDTKAIEARVTQIRKQIEEATSDYDREKLQERVAKLAGGVALIKVGAATEMEMKEKKARVEDAFHATRAAVEEGIVPGGGVALLRTIDAVSKAKGDNHDQDSGIKIVLRALEEPLRQIVTNCGDEASVVVNKVKEGKGNFGYNAATGEYGDLVAMGVLD-PTKVTRSALQNASS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 1.062e-22
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_BURP8 (60 kDa chaperonin OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.062e-22
Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G    IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+ GGGVAL+ A   +  +   N  +  G+K++  A++ PL  I +  G + SVV   +     +  Y+    EY D V++ +VD P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGEAANIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRARSAISGVKGDNADQDAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAGGTGNYGYNAATGEYGDLVEAGVVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 1.062e-22
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_HELHP (60 kDa chaperonin OS=Helicobacter hepaticus GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.062e-22
Identity = 66/195 (33.85%), Postives = 104/195 (53.33%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPD-LEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS  ++ +  +   I  G G    ++DR  Q+   IE +TSDY+ + L+ERL  LS  VA++KVG A+  E                  ++EGI+ GGG AL+ AS++++    +   E IG  +++ A+K PL  IA+ AG+   VV   + + + D   ++    EYVD  K  I+D PLK+ +  L +AVS
Sbjct:  317 LGSAARIVIDKDNTTIVDGKGKTKDVKDRIAQIKTEIENTTSDYDREKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVDEGIVIGGGSALIRASQKVKL--KLEGDEAIGYDIIKRAIKAPLAQIATNAGYDAGVVVNEVEKNSKDGFGFNATTGEYVDMFKEGIID-PLKVTRVALQNAVS 508          

HSP 2 Score: 22.3274 bits (46), Expect = 1.062e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_SINMW (60 kDa chaperonin 2 OS=Sinorhizobium medicae (strain WSM419) GN=groL2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.062e-22
Identity = 65/196 (33.16%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            +LG  K+V V      I  G+G++  I  R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGG+T  E                  +EEGI+PGGGVALL     L  L   N  +++G+++++ A++ P+  IA  AG + S +V KL  +E+    ++    E+ D  +  ++D P K+++  L DA S
Sbjct:  316 ILGRAKRVMVEKETTTIVDGAGSKADIGGRVAQIKAQIEDTTSDYDREKLQERLAKLAGGVAVIRVGGSTEIEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRVVSVLNGLATANDDQRVGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKEDFAFGWNAQTGEFGDLFQMGVID-PAKVVRAALQDAAS 510          

HSP 2 Score: 20.7866 bits (42), Expect = 1.062e-22
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            K+++ DIAILTG
Sbjct:  286 KSMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PANAN (60 kDa chaperonin (Fragment) OS=Pantoea ananas GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.062e-22
Identity = 63/194 (32.47%), Postives = 101/194 (52.06%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+V +  +   I  G G +  I+ R  Q+   IE +TSDY+ + L+ER+  L+  VA+LKVG AT  E                  +EEG++ GGGVAL+  + +L +L   N  + +G+K+   A++ PL  I S AG + SVV   +   + +  Y+   +EY + +   I+D P K+ ++ L  A S
Sbjct:  317 LGQAKRVVINKDTTTIIDGVGEETTIQGRVTQIRQQIEEATSDYDKEKLQERVAKLAGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAAQLTELRGQNEDQNVGIKVALRAMESPLRQIVSNAGEEPSVVANNVKAGDGNYGYNAQTEEYGNMIDFGILD-PTKVTRSALQYAAS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 1.062e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_EHRRW (60 kDa chaperonin OS=Ehrlichia ruminantium (strain Welgevonden) GN=groL PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.078e-22
Identity = 64/197 (32.49%), Postives = 109/197 (55.33%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQ-VYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS--VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K +++T +   I G   N   +++ R  Q+   I+ STSDY+ + L+ERL  LS  VA+LKVGG++  E                  +EEG++PGGG ALL+    L+ L + N  E++G+ +++ A++ P+  I   AG + +  V+  LL Q + +L ++     + +A  S ++D PLK+++   D AVS
Sbjct:  318 LGTAKNIRITKDTTTIIGSVDNSCAHVQSRICQIRMQIDNSTSDYDKEKLQERLAKLSGGVAVLKVGGSSEVEVKERKDRVEDALHATRAAVEEGVVPGGGAALLYTLSALDNLKSKNDDEQLGINIVKRALQAPIKRIIKNAGSENAPCVIAHLLKQNDKELIFNVDVMNFANAFTSGVID-PLKVVRIAFDFAVS 513          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_EHRRG (60 kDa chaperonin OS=Ehrlichia ruminantium (strain Gardel) GN=groL PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.078e-22
Identity = 64/197 (32.49%), Postives = 109/197 (55.33%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQ-VYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS--VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K +++T +   I G   N   +++ R  Q+   I+ STSDY+ + L+ERL  LS  VA+LKVGG++  E                  +EEG++PGGG ALL+    L+ L + N  E++G+ +++ A++ P+  I   AG + +  V+  LL Q + +L ++     + +A  S ++D PLK+++   D AVS
Sbjct:  318 LGTAKNIRITKDTTTIIGSVDNSCAHVQSRICQIRMQIDNSTSDYDKEKLQERLAKLSGGVAVLKVGGSSEVEVKERKDRVEDALHATRAAVEEGVVPGGGAALLYTLSALDNLKSKNDDEQLGINIVKRALQAPIKRIIKNAGSENAPCVIAHLLKQNDKELIFNVDVMNFANAFTSGVID-PLKVVRIAFDFAVS 513          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PELCD (60 kDa chaperonin OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.381e-22
Identity = 63/195 (32.31%), Postives = 106/195 (54.36%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+ K++ +      I  G+G++V I+ R +Q+   IE + SDY+ + L+ERL  L   VA++KVG AT  E                  +EEGI+PGGGVAL+   + +E L      +  GV +++ A++ PL  I++ AG + S+V   +        ++   DEY D +++ I+D P K++++ L +A S
Sbjct:  316 MLGNAKRIVIDKENSTIIDGAGSEVDIQGRVKQIRAQIEETKSDYDREKLQERLAKLVGGVAVVKVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRCIKAIESLDLPG-EQNWGVNIVKRAMEEPLRQISANAGAEGSIVVNQVRGGADTYGFNAAADEYCDMIEAGIID-PTKVVRSALQNASS 508          

HSP 2 Score: 21.9422 bits (45), Expect = 1.381e-22
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PECCP (60 kDa chaperonin OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=groL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.381e-22
Identity = 62/194 (31.96%), Postives = 101/194 (52.06%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+V +  +   I  G+G +  I+ R  Q+   +E +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++ GGGVAL+  + +L  L A N  + +G+K+   A++ PL  I S AG + SVV   +     +  Y+   +EY + +   I+D P K+ ++ L  A S
Sbjct:  317 LGQAKRVVINKDTTTIIDGTGEEAAIQGRVAQIRQQVEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALAATRAAVEEGVVAGGGVALVRVAAKLASLTAQNEDQNVGIKVALRAMEAPLRQIVSNAGEEPSVVANTVKAGEGNYGYNAATEEYGNMIDFGILD-PTKVTRSALQYAAS 509          

HSP 2 Score: 20.4014 bits (41), Expect = 1.381e-22
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIA LTG
Sbjct:  286 KAMLQDIATLTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_VARPS (60 kDa chaperonin OS=Variovorax paradoxus (strain S110) GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.381e-22
Identity = 66/195 (33.85%), Postives = 103/195 (52.82%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEEL-EKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V     II  GSG    IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++ GGGVALL A + + +K+   N  +  G+KL+  A++ PL  I + AG + SVV   +     +  ++   D Y D ++  I+D P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTIIIDGSGAAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALLRAKQAVGDKVKGDNADQDAGIKLVLKAIEAPLREIVNNAGGEASVVVNAVLAGKGNYGFNAANDTYGDMLELGILD-PTKVTRTALQNAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 1.381e-22
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NITEC1.062e-2233.5160 kDa chaperonin OS=Nitrosomonas eutropha (strain... [more]
CH60_BURP81.062e-2232.4760 kDa chaperonin OS=Burkholderia phymatum (strain... [more]
CH60_HELHP1.062e-2233.8560 kDa chaperonin OS=Helicobacter hepaticus GN=gro... [more]
CH602_SINMW1.062e-2233.1660 kDa chaperonin 2 OS=Sinorhizobium medicae (stra... [more]
CH60_PANAN1.062e-2232.4760 kDa chaperonin (Fragment) OS=Pantoea ananas GN=... [more]
CH60_EHRRW1.078e-2232.4960 kDa chaperonin OS=Ehrlichia ruminantium (strain... [more]
CH60_EHRRG1.078e-2232.4960 kDa chaperonin OS=Ehrlichia ruminantium (strain... [more]
CH60_PELCD1.381e-2232.3160 kDa chaperonin OS=Pelobacter carbinolicus (stra... [more]
CH60_PECCP1.381e-2231.9660 kDa chaperonin OS=Pectobacterium carotovorum su... [more]
CH60_VARPS1.381e-2233.8560 kDa chaperonin OS=Variovorax paradoxus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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