FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_ERWT9 (60 kDa chaperonin OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.381e-22
Identity = 63/194 (32.47%), Postives = 101/194 (52.06%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            +G  K+V ++ +   I  G+G +V I  R  Q+   IE +TSDY+ + L+ER+  L+  VA+LKVG AT  E                  +EEG++ GGGVAL+  +  L +L   N  + +G+K+   A++ PL  I S AG + SVV   +     +  Y+   +EY + +   I+D P K+ ++ L  A S
Sbjct:  317 MGQAKRVVISKDTTTIIDGTGEEVAISGRVTQIRQQIEDATSDYDREKLQERVAKLAGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAAMLTELRGQNEDQNVGIKVALRAMESPLRQIVSNAGEEPSVVTNAVKAGEGNYGYNAQTEEYGNMIDFGILD-PTKVTRSALQYAAS 509

HSP 2 Score: 21.9422 bits (45), Expect = 1.381e-22
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIA+LTG
Sbjct:  286 KAMLQDIAVLTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PSESM (60 kDa chaperonin OS=Pseudomonas syringae pv. tomato GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.381e-22
Identity = 63/194 (32.47%), Postives = 103/194 (53.09%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V +      I  G+G +  I+ R  Q+   I  ++SDY+ + L+ERL  LS  VA++KVG  +  E                  +EEG++PGGGVAL+ + + +E L   N  + +G+ LL+ AV+ PL  I + +G + SVV   + Q + +  Y+    EY D ++  I+D P K+ ++ L  A S
Sbjct:  317 LGNAKRVILNKENTTIIDGAGVKTDIDSRISQIRQQIGDTSSDYDKEKLQERLAKLSGGVAVIKVGAGSEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRSLQAIEGLKGDNADQDVGIALLRRAVEAPLRQIVANSGDEPSVVVDKVKQGSGNFGYNAASGEYGDMIEMGILD-PAKVTRSALQAASS 509

HSP 2 Score: 21.9422 bits (45), Expect = 1.381e-22
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIA+LTG
Sbjct:  286 KAMLQDIAVLTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PSE14 (60 kDa chaperonin OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.381e-22
Identity = 63/194 (32.47%), Postives = 103/194 (53.09%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V +      I  G+G +  I+ R  Q+   I  ++SDY+ + L+ERL  LS  VA++KVG  +  E                  +EEG++PGGGVAL+ + + +E L   N  + +G+ LL+ AV+ PL  I + +G + SVV   + Q + +  Y+    EY D ++  I+D P K+ ++ L  A S
Sbjct:  317 LGNAKRVILNKENTTIIDGAGVKTDIDSRISQIRQQIGDTSSDYDKEKLQERLAKLSGGVAVIKVGAGSEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRSLQAIEGLKGDNADQDVGIALLRRAVEAPLRQIVANSGDEPSVVVDKVKQGSGNFGYNAASGEYGDMIEMGILD-PAKVTRSALQAASS 509

HSP 2 Score: 21.9422 bits (45), Expect = 1.381e-22
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIA+LTG
Sbjct:  286 KAMLQDIAVLTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_SHEPA (60 kDa chaperonin OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=groL PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.381e-22
Identity = 64/194 (32.99%), Postives = 104/194 (53.61%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K+V +T ++  I  G+G +  I+ R  Q+    E STSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++ GGGVAL+  + ++ +L  +N  +K GV +   A++ PL  IA+ AG + SVV   +     +  Y+   D Y D ++  I+D P K+ ++ L  A S
Sbjct:  317 LGTAKRVIITKDDTTIIDGNGEETQIKARVAQIKIQAEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVASKIGELDVINEDQKHGVIIALRAMEAPLRQIAANAGEEGSVVANNVKNGTGNYGYNAGNDTYGDMLEMGILD-PTKVTRSALQFASS 509

HSP 2 Score: 22.3274 bits (46), Expect = 1.381e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.381e-22
Identity = 67/195 (34.36%), Postives = 103/195 (52.82%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV-EKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG   ++ V      I GG G++  +E R +++   IE +TS+Y+ + L+ERL  L+  VA++KVG AT  E                  +EEGI+ GGG AL+ A+ ++     +   EKIG +++  A+K PL  IA  AGF   VV   +   EN +  ++    EYVD  ++ IVD P K+ +  L +AVS
Sbjct:  318 LGQADRIVVDKENTTIVGGKGDKAAVEARIKEIKAQIEQTTSEYDKEKLQERLAKLAGGVAVIKVGAATETEMKEKKDRVDDALAATKAAVEEGIVIGGGTALVRAANKVNL--DLCGDEKIGAEIILRAIKAPLKQIAENAGFDPGVVANNVENAENENTGFNAATGEYVDMFEAGIVD-PAKVERVALQNAVS 509

HSP 2 Score: 22.3274 bits (46), Expect = 1.381e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  287 KAMLQDIAILTG 298
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_NEIGO (60 kDa chaperonin OS=Neisseria gonorrhoeae GN=groL PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.381e-22
Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K++++      +  G G+   IE R  ++   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++ GGGVALL A   LE L   N  +  GV+++  AV+ PL  I + AG + SVV   + +   +  Y+    EY D +   ++D P K+ ++ L  A S
Sbjct:  317 LGQAKRIEIGKENTTVIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIGMGVLD-PAKVTRSALQHAAS 509

HSP 2 Score: 22.3274 bits (46), Expect = 1.381e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_NEIG2 (60 kDa chaperonin OS=Neisseria gonorrhoeae (strain NCCP11945) GN=groL PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.381e-22
Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K++++      +  G G+   IE R  ++   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++ GGGVALL A   LE L   N  +  GV+++  AV+ PL  I + AG + SVV   + +   +  Y+    EY D +   ++D P K+ ++ L  A S
Sbjct:  317 LGQAKRIEIGKENTTVIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIGMGVLD-PAKVTRSALQHAAS 509

HSP 2 Score: 22.3274 bits (46), Expect = 1.381e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_NEIG1 (60 kDa chaperonin OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=groL PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.381e-22
Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K++++      +  G G+   IE R  ++   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++ GGGVALL A   LE L   N  +  GV+++  AV+ PL  I + AG + SVV   + +   +  Y+    EY D +   ++D P K+ ++ L  A S
Sbjct:  317 LGQAKRIEIGKENTTVIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIGMGVLD-PAKVTRSALQHAAS 509

HSP 2 Score: 22.3274 bits (46), Expect = 1.381e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_CHLAA (60 kDa chaperonin 1 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=groL1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.381e-22
Identity = 66/199 (33.17%), Postives = 110/199 (55.28%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV---EKLLGQENPD--LEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  +KV  T ++  I  G G++  I  R EQ+   I  +TSD++ + L+ERL  L+  VA++KVG AT  E                  +EEGI+PGGGVAL++A   L+ +   +  EK+G+++L+ A++ PL  +A  AG   SV+    + L +E  D  + Y+    +Y   ++  I+D P+K+ ++ + +AVS
Sbjct:  315 LGRARKVIATKDDTTIIEGRGDEAAIRARIEQIRAQIATTTSDFDREKLQERLAKLAGGVAVIKVGAATEPELKEKKHRVEDALSATRAAVEEGIVPGGGVALINAIPALDNVQVAHEDEKVGLQILRRALEEPLRILARNAGEDGSVIIANVRRLQEEKGDKTIGYNVLTGQYGSMIEQGIID-PVKVTRSAVQNAVS 512

HSP 2 Score: 22.3274 bits (46), Expect = 1.381e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  284 KAMLQDIAILTG 295
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_GEOSW (60 kDa chaperonin OS=Geobacillus sp. (strain WCH70) GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.382e-22
Identity = 64/194 (32.99%), Postives = 104/194 (53.61%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG   KV VT     I  G+G+   I+ R  Q+   +E +TS+++ + L+ERL  L+  VA++KVG AT  E                  +EEGI+ GGG AL++   ++  + A    E  GVK++  A++ P+  IA  AG + SV+ + L  E P + ++    E+VD +++ IVD P K+ ++ L +A S
Sbjct:  315 LGRASKVVVTKENTTIVDGAGDSERIKARINQIRAQLEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTALMNVYNKVAAIEAEG-DEATGVKIVLRAIEEPVRQIAQNAGLEGSVIVERLKTEKPGIGFNAATGEWVDMIEAGIVD-PTKVTRSALQNAAS 506

HSP 2 Score: 21.9422 bits (45), Expect = 1.382e-22
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  284 KAMLEDIAILTG 295
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ERWT91.381e-2232.4760 kDa chaperonin OS=Erwinia tasmaniensis (strain ... [more]
CH60_PSESM1.381e-2232.4760 kDa chaperonin OS=Pseudomonas syringae pv. toma... [more]
CH60_PSE141.381e-2232.4760 kDa chaperonin OS=Pseudomonas syringae pv. phas... [more]
CH60_SHEPA1.381e-2232.9960 kDa chaperonin OS=Shewanella pealeana (strain A... [more]
CH60_NITSB1.381e-2234.3660 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]
CH60_NEIGO1.381e-2232.4760 kDa chaperonin OS=Neisseria gonorrhoeae GN=groL... [more]
CH60_NEIG21.381e-2232.4760 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]
CH60_NEIG11.381e-2232.4760 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]
CH601_CHLAA1.381e-2233.1760 kDa chaperonin 1 OS=Chloroflexus aurantiacus (s... [more]
CH60_GEOSW1.382e-2232.9960 kDa chaperonin OS=Geobacillus sp. (strain WCH70... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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