FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_NITEU (60 kDa chaperonin OS=Nitrosomonas europaea GN=groL PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.042e-22
Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V      I  G+G+   IE R  Q+   IE ++SDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGVALL     + K+   N  +  G+K++  A++ PL  I +  G + SVV   + +      Y+    EY D V   ++D P K+ ++ L +A S
Sbjct:  317 LGQAKRIEVGKENTTIIDGAGDVKTIEARVAQIRKQIEEASSDYDREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRTINAVSKIKGDNHDQDSGIKIVLRAMEEPLRQIVTNCGDEASVVVNKVKEGQGTFGYNAATGEYGDLVAMGVLD-PTKVTRSALQNAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 3.042e-22
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_VIBPA (60 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=groL1 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 3.042e-22
Identity = 61/194 (31.44%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+V +T     I  G+G +  I+ R  Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++ GGGVAL+ A+ ++  L   N  + +G+++   A++ P+  I   AG + SVV   +        Y+    EY D ++  I+D P K+ ++ L  A S
Sbjct:  317 LGQAKRVSITKENSTIIDGAGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKIVDLEGDNEEQNVGIRVALRAMEAPIRQITKNAGDEDSVVANNVKAGEGSYGYNAATGEYGDMLEMGILD-PTKVTRSALQFAAS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 3.042e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CALS8 (60 kDa chaperonin OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=groL PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.042e-22
Identity = 64/195 (32.82%), Postives = 102/195 (52.31%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIG-EKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  ++VKV     II  G+G+   I+ R + +   IE +TSD++ + L+ERL  L+  VA++ VG AT  E                  +EEGI+PGGG A ++A   L+KL     G EK G  +++ A++ PL  IA  AG   SV+   + +    + +D   + +VD  ++ IVD P K+ +  + +A S
Sbjct:  316 LGRARQVKVQKENTIIVDGAGDPSEIKARIQSIKKQIEETTSDFDREKLQERLAKLAGGVAVIHVGAATETEMKEKKLRIEDALAATKAAVEEGIVPGGGTAFINAIPALDKLIETLTGDEKTGAMIVKKALEEPLRQIAENAGLDGSVIVNKVKESPAGIGFDALNERFVDMFEAGIVD-PTKVTRTAIQNAAS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 3.042e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  285 KAMLQDIAILTG 296          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_XYLFA (60 kDa chaperonin OS=Xylella fastidiosa GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 64/194 (32.99%), Postives = 100/194 (51.55%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  KKV+V+     I  G G+   I  R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG+IPGGGVAL+ A   +  L   N  +  G+++   A++ PL  I + AG + SV+   + +   +  Y+    E+ D V   I+D P K+ ++ L +A S
Sbjct:  317 LGKAKKVRVSKENTTIIDGIGDNDAINGRVKQIKTQIEETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALLATRAAVEEGVIPGGGVALIRAITAISNLKGANEDQTHGIQIALRAMEAPLREIVANAGEEPSVILNKVKEGKDNFGYNAATGEFGDMVNLGILD-PTKVTRSALQNAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_FRATO (60 kDa chaperonin OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 67/194 (34.54%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+  +V+VT +   I  G+G +  I  R   +   I  + SDY+ + L+ERL  LS  VA++KVG  T AE                  +EEGI+ GGGVAL+ A + L+ L   N  +  G+ LL+ A++ PL  I S AG + SVV   +     +  Y+   D Y D V+  I+D P K+ ++ L  A S
Sbjct:  317 LGTASRVQVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIKVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGLTGENDDQNHGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGNYGYNAANDTYGDMVEMGILD-PTKVTRSALQHAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_FRATN (60 kDa chaperonin OS=Francisella tularensis subsp. novicida (strain U112) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 67/194 (34.54%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+  +V+VT +   I  G+G +  I  R   +   I  + SDY+ + L+ERL  LS  VA++KVG  T AE                  +EEGI+ GGGVAL+ A + L+ L   N  +  G+ LL+ A++ PL  I S AG + SVV   +     +  Y+   D Y D V+  I+D P K+ ++ L  A S
Sbjct:  317 LGTASRVQVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIKVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGLTGENDDQNHGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGNYGYNAANDTYGDMVEMGILD-PTKVTRSALQHAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_FRATM (60 kDa chaperonin OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 67/194 (34.54%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+  +V+VT +   I  G+G +  I  R   +   I  + SDY+ + L+ERL  LS  VA++KVG  T AE                  +EEGI+ GGGVAL+ A + L+ L   N  +  G+ LL+ A++ PL  I S AG + SVV   +     +  Y+   D Y D V+  I+D P K+ ++ L  A S
Sbjct:  317 LGTASRVQVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIKVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGLTGENDDQNHGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGNYGYNAANDTYGDMVEMGILD-PTKVTRSALQHAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_FRATH (60 kDa chaperonin OS=Francisella tularensis subsp. holarctica (strain LVS) GN=groL PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 67/194 (34.54%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+  +V+VT +   I  G+G +  I  R   +   I  + SDY+ + L+ERL  LS  VA++KVG  T AE                  +EEGI+ GGGVAL+ A + L+ L   N  +  G+ LL+ A++ PL  I S AG + SVV   +     +  Y+   D Y D V+  I+D P K+ ++ L  A S
Sbjct:  317 LGTASRVQVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIKVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGLTGENDDQNHGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGNYGYNAANDTYGDMVEMGILD-PTKVTRSALQHAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_FRATF (60 kDa chaperonin OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 67/194 (34.54%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+  +V+VT +   I  G+G +  I  R   +   I  + SDY+ + L+ERL  LS  VA++KVG  T AE                  +EEGI+ GGGVAL+ A + L+ L   N  +  G+ LL+ A++ PL  I S AG + SVV   +     +  Y+   D Y D V+  I+D P K+ ++ L  A S
Sbjct:  317 LGTASRVQVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIKVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGLTGENDDQNHGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGNYGYNAANDTYGDMVEMGILD-PTKVTRSALQHAAS 509          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_AZOPC (60 kDa chaperonin OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 61/195 (31.28%), Postives = 102/195 (52.31%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+ +KV ++ +  +I  G+G +  I  R  Q+   IE +TSDY+ + L+ERL  L+  VA+L VG  +  E                  +EEG +PGGGVA + A   LE    +N  E  G+++++ A++ PL  I   AG + +V+ + + +E  D  Y+     Y D   + ++D P K+ +  L++A S
Sbjct:  316 MLGTAEKVTISKDNTVIVNGAGEKSAISARVSQIKTQIEKTTSDYDSEKLQERLAKLAGGVAVLYVGAPSEVEMKEKKDRVDDALSATRAAIEEGTVPGGGVAYVRAISILEGFKGINEDETTGIEIVKRAIEEPLRQIVENAGKEGAVIAQRVKEEKDDFGYNARTGIYEDLYVAGVID-PTKVARVALENAAS 509          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NITEU3.042e-2232.4760 kDa chaperonin OS=Nitrosomonas europaea GN=groL... [more]
CH601_VIBPA3.042e-2231.4460 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=... [more]
CH60_CALS83.042e-2232.8260 kDa chaperonin OS=Caldicellulosiruptor saccharo... [more]
CH60_XYLFA3.135e-2232.9960 kDa chaperonin OS=Xylella fastidiosa GN=groL PE... [more]
CH60_FRATO3.135e-2234.5460 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATN3.135e-2234.5460 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATM3.135e-2234.5460 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATH3.135e-2234.5460 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATF3.135e-2234.5460 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_AZOPC3.135e-2231.2860 kDa chaperonin OS=Azobacteroides pseudotrichony... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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