FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_RHOP5 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.275e-27
Identity = 74/196 (37.76%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+ L   N  +K GV++++ A+  P   IA  AG   SV V K+L ++  +  +D    EY + V   I+D P K+++  + +A S
Sbjct:  316 MLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGLKTKNDDQKTGVEIVRKALSWPARQIAINAGEDGSVIVGKILEKDQYNYGFDSQSGEYGNLVSKGIID-PTKVVRTAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 1.275e-27
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_NITWN (60 kDa chaperonin 2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.275e-27
Identity = 72/196 (36.73%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+++   N  +K GV++++ A+  P   IA  AG   SV V K+L +E     +D    +Y + +   I+D P K+++  + +A S
Sbjct:  316 MLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKTQNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGDYGNLISKGIID-PTKVVRTAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 1.275e-27
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_BRASB (60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.660e-27
Identity = 70/195 (35.90%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  +++++      + GG+G +  I+ R  Q+   IE +TSDY+ + L+ERL  LS  VA+++VGGAT  E                  + EGI+PGGGVALL A   + KL   N   + G++++  A++ P+  IA  AG + S VV K+L   +P   +D  ++EYVD +++ IVD P K+++  L DA S
Sbjct:  317 LGRARRIRIDKENTTVVGGTGKKKDIDARIAQIRAQIEETTSDYDREKLQERLAKLSGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAIAEGIVPGGGVALLRAKAAVSKLTNPNPDIQAGIQIVLKALEAPIRQIADNAGVEGSIVVGKILENRSPTFGFDAQKEEYVDLIEAGIVD-PAKVVRTALQDAAS 510          

HSP 2 Score: 20.4014 bits (41), Expect = 1.660e-27
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA + DIAILTG
Sbjct:  286 KAQLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THEM4 (60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.660e-27
Identity = 71/196 (36.22%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKL-PAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG    V+V  +E II GG G+Q  I+ R  Q+   IE +TS+YE + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGG+ LL A + +EK+   ++  EKIG K++  A+  P+  IA  AG+    ++ K+L Q++P   +D  + EY D  +  I+D P K+ ++ L +A S
Sbjct:  315 LGRADVVRVKKDETIIVGGHGDQEEIKKRIAQIKAQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKPVEKIVEELDGDEKIGAKIVYEALSAPINQIAKNAGYDGAIIIHKVLEQDDPAYGFDALKGEYCDMFERGIID-PAKVTRSALQNAAS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 1.660e-27
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  284 KAMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_BRASO (60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ORS278) GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.161e-27
Identity = 74/196 (37.76%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+ +   N  +K GV++++ A+  P   IA  AG   SV V K+L +E     +D    +YV+ V   I+D P K+++  + +A S
Sbjct:  316 MLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEQLKGVRTKNEDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYAYGFDSQSGDYVNMVSKGIID-PTKVVRTAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 2.161e-27
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_RHOP5 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.161e-27
Identity = 71/196 (36.22%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I GG+G +  IE R  Q+   IE ++SDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL A + + ++   N   + G+ ++  A++ P+  IA  AG + S VV K+L  ++    +D   +EYVD +   IVD P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVGGAGKKADIESRVGQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVD-PAKVVRTALQDAAS 510          

HSP 2 Score: 23.0978 bits (48), Expect = 2.161e-27
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+M DIAILTG
Sbjct:  286 KAMMEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THEPX (60 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.814e-27
Identity = 73/197 (37.06%), Postives = 113/197 (57.36%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGE-KIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  ++VKVT     I GG+G+   I+ R  Q+   IE +TSDY+ + L+ERL  L+  VA+++ G AT  E                  +EEGI+PGGG+ALL+  E+++K+     G+ K G K++  A++ P+  IA+ AG   SV VEK+   ++P+  YD  ++E+ D  K+ IVD P K+ +  L +A S
Sbjct:  314 MLGRARQVKVTKENTTIVGGAGDAAEIKKRVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIQAGAATETELKEKKHRIEDALAATKAAVEEGIVPGGGIALLNVIEDVQKVVDSLDGDFKTGAKIVLRALEEPVRQIAANAGVDGSVIVEKIKAAKDPNFGYDAYKEEFTDMFKAGIVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 20.4014 bits (41), Expect = 2.814e-27
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            K +++DIAILTG
Sbjct:  284 KEMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THEP3 (60 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.814e-27
Identity = 73/197 (37.06%), Postives = 113/197 (57.36%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGE-KIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  ++VKVT     I GG+G+   I+ R  Q+   IE +TSDY+ + L+ERL  L+  VA+++ G AT  E                  +EEGI+PGGG+ALL+  E+++K+     G+ K G K++  A++ P+  IA+ AG   SV VEK+   ++P+  YD  ++E+ D  K+ IVD P K+ +  L +A S
Sbjct:  314 MLGRARQVKVTKENTTIVGGAGDAAEIKKRVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIQAGAATETELKEKKHRIEDALAATKAAVEEGIVPGGGIALLNVIEDVQKVVDSLDGDFKTGAKIVLRALEEPVRQIAANAGVDGSVIVEKIKAAKDPNFGYDAYKEEFTDMFKAGIVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 20.4014 bits (41), Expect = 2.814e-27
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            K +++DIAILTG
Sbjct:  284 KEMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_MESSB (60 kDa chaperonin 1 OS=Mesorhizobium sp. (strain BNC1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.662e-27
Identity = 74/196 (37.76%), Postives = 105/196 (53.57%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  K+V +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGG ALL AS E+ K    N  ++ GV +++ A++ P   IAS AG + S VV K+L        Y+    EY D +   IVD P+K+++  L DA S
Sbjct:  316 MLGRAKRVSIAKETTTIVDGAGQKSEIEGRVAQIKSQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVPGGGTALLRASSEI-KAKGENADQEAGVNIVRRAIQAPARQIASNAGAEASIVVGKILDNNAVTFGYNAQTGEYGDMIGMGIVD-PMKVVRTALQDAAS 509          

HSP 2 Score: 21.557 bits (44), Expect = 3.662e-27
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIA+LTG
Sbjct:  286 KAMLEDIAVLTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RHIL3 (60 kDa chaperonin OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 73/196 (37.24%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  K+V +      I  GSG +  I+ R +Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL A   L  L   N     G+ ++  A++ P+  I   AGF+ S VV KL G  + +  +D   + YVD +++ IVD P K+++  L DA S
Sbjct:  316 MLGHAKRVLIDKESTTIIDGSGEKAAIQARIQQIKAQIEDTTSDYDKEKLQERLAKLAGGVAVIRVGGATETEVKEKKDRIDDALNATRAAVEEGIVPGGGVALLRAKSALTGLTGENADVTAGISIVLRALEAPIRQIVDNAGFEGSIVVGKLAGSNDHNQGFDAQTETYVDMIEAGIVD-PAKVVRTALQDAGS 510          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_RHOP51.275e-2737.7660 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_NITWN1.275e-2736.7360 kDa chaperonin 2 OS=Nitrobacter winogradskyi (s... [more]
CH602_BRASB1.660e-2735.9060 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ... [more]
CH60_THEM41.660e-2736.2260 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]
CH602_BRASO2.161e-2737.7660 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ... [more]
CH601_RHOP52.161e-2736.2260 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_THEPX2.814e-2737.0660 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH60_THEP32.814e-2737.0660 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH601_MESSB3.662e-2737.7660 kDa chaperonin 1 OS=Mesorhizobium sp. (strain B... [more]
CH60_RHIL34.228e-2737.2460 kDa chaperonin OS=Rhizobium leguminosarum bv. v... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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