FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.767e-27
Identity = 74/214 (34.58%), Postives = 117/214 (54.67%), Query Frame = 3
Query:  129 TAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEY--DPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            TA S  L I L      MLG  KKV +      I  G+G++  I+ R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEG++PGGGVALL A++ L+ +   N  +K+G+ +++ A++ P+  IA  AG + S++   + +E PD  Y  +    EY D  +  ++D P+K+++  L DA S
Sbjct:  299 TAISEDLGIKLENVTLEMLGRAKKVVIEKENTTIVDGAGSKDEIQGRVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGLLPGGGVALLRAAKALDNVTGENEDQKVGISIVRRAIEAPIRQIAENAGAEGSIIVGRV-REKPDFGYGWNAQTGEYGDLYQMGVID-PVKVVRAALQDAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 4.767e-27
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH603_BRASB (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL3 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.768e-27
Identity = 72/196 (36.73%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R +Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL A++ L+ +   N  +K GV +++ A+++P+  I   AG   S VV KLL ++     ++    EY D V++ ++D P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVDGAGAKKDIEARTQQIKLQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRAAVEEGILPGGGVALLRATKVLDGVKTANADQKAGVDIIRRAIQVPVRQIVQNAGEDGSLVVGKLLEKDTYSWGFNAATGEYQDLVQAGVID-PAKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 4.768e-27
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_BRASO (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ORS278) GN=groL1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.768e-27
Identity = 72/196 (36.73%), Postives = 111/196 (56.63%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R +Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL A++ L+ +   N  +K GV +++ A+++P+  I   AG   S VV KLL +++    ++    EY D V++ ++D P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVDGAGAKKDIEARTQQIRLQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRAAVEEGILPGGGVALLRATKVLDGVKTANADQKAGVDIIRRAIQVPVRQIVQNAGDDGSLVVGKLLEKDSYSWGFNAATGEYQDLVQAGVID-PAKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 4.768e-27
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_NEOSM (60 kDa chaperonin OS=Neorickettsia sennetsu (strain Miyayama) GN=groL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27
Identity = 72/195 (36.92%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K + ++ +   I  G G +  IE R +Q+   I+ +TSDY+ + L+ERL  L+  VA+LKVGGAT  E                  +EEGI+PGGG  LL A   LEKL + +  E+ G+ +++ A+K P+  I   AG   SV+   LL  ++P+  +D    +YVDA K+ I+D P K+++  L+ AVS
Sbjct:  318 LGTAKSIIISKDSTTIVDGGGEKTAIEARVKQIKTQIDKTTSDYDKEKLQERLAKLAGGVAVLKVGGATEVEVKERKDRVEDALHATRAAVEEGIVPGGGATLLSAIAVLEKLSSDDDDEQAGINIVKTALKAPISQIVENAGEDASVITYNLLESKDPNRIFDARELKYVDAFKAGIID-PAKVVRVALESAVS 511          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_EHRSE (60 kDa chaperonin OS=Ehrlichia sennetsu GN=groL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27
Identity = 72/195 (36.92%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K + ++ +   I  G G +  IE R +Q+   I+ +TSDY+ + L+ERL  L+  VA+LKVGGAT  E                  +EEGI+PGGG  LL A   LEKL + +  E+ G+ +++ A+K P+  I   AG   SV+   LL  ++P+  +D    +YVDA K+ I+D P K+++  L+ AVS
Sbjct:  318 LGTAKSIIISKDSTTIVDGGGEKTAIEARVKQIKTQIDKTTSDYDKEKLQERLAKLAGGVAVLKVGGATEVEVKERKDRVEDALHATRAAVEEGIVPGGGATLLSAIAVLEKLSSDDDDEQAGINIVKTALKAPISQIVENAGEDASVITYNLLESKDPNRIFDARELKYVDAFKAGIID-PAKVVRVALESAVS 511          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH603_BRAJA (60 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN=groL3 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 6.205e-27
Identity = 75/196 (38.27%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE+L+ L   N  +K GV++++ A+  P   IA  AG   S VV K+L  E     +D    EY + V   I+D P K+++  + +A S
Sbjct:  316 MLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGLRTENDDQKTGVEIVRKALSWPARQIAINAGEDGSIVVGKVLDNEQYSFGFDAQTGEYSNLVSKGIID-PAKVVRIAVQNASS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 6.205e-27
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_WOLTR (60 kDa chaperonin OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=groL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.212e-27
Identity = 70/195 (35.90%), Postives = 108/195 (55.38%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K VKVT +   I  GS +   ++ R EQ+   IE STSDY+ + L ERL  LS  VA+LKVGG T  E                  +EEGI+PGGGVALL+AS  L+KL   +  E+IG+ +++  +  P+  +   AG + +V ++ L  Q + +L Y+     Y +A  + ++D P K+++   + A+S
Sbjct:  320 LGTAKNVKVTKDNTTIVSGSSDSDRVKARVEQIKSQIETSTSDYDKEKLRERLAKLSGGVAVLKVGGVTEVEVKERRDRVEDALHATRAAIEEGIVPGGGVALLYASSALDKLKGGSDEEQIGINIIKKVLSAPIKRLVKNAGLESAVIIDHLTKQNDKELIYNVEAMNYANAFTAGVID-PAKVVRIAFETAIS 513          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_COXBU (60 kDa chaperonin OS=Coxiella burnetii GN=groL PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.075e-27
Identity = 69/195 (35.38%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV-EKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS K+V VT ++  I  GSG+   I++R EQ+   IE S+SDY+ + L+ERL  L+  VA++KVG AT  E                  +EEG++PGGGVAL+   + L+ +   N  +++GV++ + A+  PL  I    G Q +VV +K+L  ++ +  Y+    EY D ++  I+D P K+ +  L +A S
Sbjct:  317 LGSAKRVVVTKDDTTIIDGSGDAGDIKNRVEQIRKEIENSSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRVLKSLDSVEVENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILD-PTKVTRTALQNAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 8.075e-27
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIA+LTG
Sbjct:  286 KAMLQDIAVLTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_COXBR (60 kDa chaperonin OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.075e-27
Identity = 69/195 (35.38%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV-EKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS K+V VT ++  I  GSG+   I++R EQ+   IE S+SDY+ + L+ERL  L+  VA++KVG AT  E                  +EEG++PGGGVAL+   + L+ +   N  +++GV++ + A+  PL  I    G Q +VV +K+L  ++ +  Y+    EY D ++  I+D P K+ +  L +A S
Sbjct:  317 LGSAKRVVVTKDDTTIIDGSGDAGDIKNRVEQIRKEIENSSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRVLKSLDSVEVENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILD-PTKVTRTALQNAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 8.075e-27
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIA+LTG
Sbjct:  286 KAMLQDIAVLTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_COXBN (60 kDa chaperonin OS=Coxiella burnetii (strain Dugway 5J108-111) GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.075e-27
Identity = 69/195 (35.38%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV-EKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS K+V VT ++  I  GSG+   I++R EQ+   IE S+SDY+ + L+ERL  L+  VA++KVG AT  E                  +EEG++PGGGVAL+   + L+ +   N  +++GV++ + A+  PL  I    G Q +VV +K+L  ++ +  Y+    EY D ++  I+D P K+ +  L +A S
Sbjct:  317 LGSAKRVVVTKDDTTIIDGSGDAGDIKNRVEQIRKEIENSSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRVLKSLDSVEVENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILD-PTKVTRTALQNAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 8.075e-27
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIA+LTG
Sbjct:  286 KAMLQDIAVLTG 297          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_MESSB4.767e-2734.5860 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]
CH603_BRASB4.768e-2736.7360 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]
CH601_BRASO4.768e-2736.7360 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH60_NEOSM5.522e-2736.9260 kDa chaperonin OS=Neorickettsia sennetsu (strai... [more]
CH60_EHRSE5.522e-2736.9260 kDa chaperonin OS=Ehrlichia sennetsu GN=groL PE... [more]
CH603_BRAJA6.205e-2738.2760 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN... [more]
CH60_WOLTR7.212e-2735.9060 kDa chaperonin OS=Wolbachia sp. subsp. Brugia m... [more]
CH60_COXBU8.075e-2735.3860 kDa chaperonin OS=Coxiella burnetii GN=groL PE=... [more]
CH60_COXBR8.075e-2735.3860 kDa chaperonin OS=Coxiella burnetii (strain RSA... [more]
CH60_COXBN8.075e-2735.3860 kDa chaperonin OS=Coxiella burnetii (strain Dug... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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