FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_COXB2 (60 kDa chaperonin OS=Coxiella burnetii (strain CbuG_Q212) GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.075e-27
Identity = 69/195 (35.38%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV-EKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS K+V VT ++  I  GSG+   I++R EQ+   IE S+SDY+ + L+ERL  L+  VA++KVG AT  E                  +EEG++PGGGVAL+   + L+ +   N  +++GV++ + A+  PL  I    G Q +VV +K+L  ++ +  Y+    EY D ++  I+D P K+ +  L +A S
Sbjct:  317 LGSAKRVVVTKDDTTIIDGSGDAGDIKNRVEQIRKEIENSSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRVLKSLDSVEVENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILD-PTKVTRTALQNAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 8.075e-27
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIA+LTG
Sbjct:  286 KAMLQDIAVLTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_COXB1 (60 kDa chaperonin OS=Coxiella burnetii (strain CbuK_Q154) GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.075e-27
Identity = 69/195 (35.38%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV-EKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS K+V VT ++  I  GSG+   I++R EQ+   IE S+SDY+ + L+ERL  L+  VA++KVG AT  E                  +EEG++PGGGVAL+   + L+ +   N  +++GV++ + A+  PL  I    G Q +VV +K+L  ++ +  Y+    EY D ++  I+D P K+ +  L +A S
Sbjct:  317 LGSAKRVVVTKDDTTIIDGSGDAGDIKNRVEQIRKEIENSSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRVLKSLDSVEVENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILD-PTKVTRTALQNAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 8.075e-27
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIA+LTG
Sbjct:  286 KAMLQDIAVLTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 8.076e-27
Identity = 74/196 (37.76%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL ASE L+ +   N  +K GV++++ A+  P   IA  AG   SV V K+L ++     YD    EY + V   I+D P K+++  + +A S
Sbjct:  316 MLGRAKKVMIDKENTTIVSGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEHLKGIRTKNDDQKTGVEIVRKALSYPARQIAINAGEDGSVIVGKILEKDQYSYGYDSQTGEYGNLVSKGIID-PTKVVRVAIQNAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 8.076e-27
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_GRAFK (60 kDa chaperonin OS=Gramella forsetii (strain KT0803) GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.077e-27
Identity = 70/195 (35.90%), Postives = 106/195 (54.36%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+ +KV +  +   +  G+G+   I++R  Q+   IE +TSDY+ + L+ERL  L+  VA+L VG A+  E                  +EEGI+ GGGVAL+ A   L K+   N  E  GVK++  A++ PL TI   AG + SVV   + +   D  YD   + YVD +K+ I+DP  K+ +  L++A S
Sbjct:  316 MLGTAEKVAIDKDNTTVVNGAGDDKAIKERVNQIKAQIESTTSDYDREKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQVVLSKIKTENPDEATGVKIVSKAIESPLRTIVENAGGEGSVVINKVLEGKKDFGYDAKTETYVDMLKAGIIDPK-KVTRVALENAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 8.077e-27
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_DINSH (60 kDa chaperonin OS=Dinoroseobacter shibae (strain DFL 12) GN=groL PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.077e-27
Identity = 71/197 (36.04%), Postives = 112/197 (56.85%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLE--YDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLGS K+V +T +E  I  G+G +  IE R  Q+ + IE +TSDY+ + L+ER+  L+  VA+++VGG T  E                  ++EGI+ GGGVAL+ A++ L+ L   N  + IG+ +++ A++ PL  IA  AG   SVV   + +E+ DL   ++   +EY D  K  ++D P K+++  L DA S
Sbjct:  316 MLGSAKRVSITKDETTIVDGAGAKAEIEARVAQIRNQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQAAKHLDGLEGANNDQNIGINIVRKALEAPLRQIAENAGVDGSVVAGKI-RESSDLAFGFNAQTEEYGDMFKFGVID-PAKVVRTALQDAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 8.077e-27
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THEBR (60 kDa chaperonin OS=Thermoanaerobacter brockii GN=groL PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.078e-27
Identity = 73/197 (37.06%), Postives = 113/197 (57.36%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGE-KIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  ++VKVT     I GG+G+   I+ R  Q+   IE +TSDY+ + L+ERL  L+  VA+++ G AT  E                  +EEGI+PGGG+ALL+  E+++K+     G+ K G K++  A++ P+  IA+ AG   SV VEK+   ++P+  YD  ++E+ D  K+ IVD P K+ +  L +A S
Sbjct:  314 MLGRARQVKVTKEYTTIVGGAGDPSEIKKRVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIQAGAATETELKEKKHRIEDALAATKAAVEEGIVPGGGIALLNVIEDVQKVVDSLEGDFKTGAKIVLRALEEPVRQIATNAGVDGSVIVEKIKAAKDPNFGYDAYKEEFTDMFKAGIVD-PTKVTRTALQNAAS 509          

HSP 2 Score: 20.4014 bits (41), Expect = 8.078e-27
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            K +++DIAILTG
Sbjct:  284 KEMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: HSP60_PARBA (Heat shock protein 60, mitochondrial OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP60 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.419e-27
Identity = 78/200 (39.00%), Postives = 110/200 (55.00%), Query Frame = 3
Query:  156 PLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAI-EMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEE-LEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLE--YDPPRDEYVDAVKSAIVDPPLKLIKNELDDA 740
            P MLGS   + +T  + II  G G++  I  RCEQ+   I + +TSDYE + L+ERL  LS  VA++KVGGA+  E                  +EEGI+PGGG ALL A+   L  L   N  +K+G+ ++++A+  P  TI   +G + SV V KL      D    +D  R EYVD + + IVD PLK+++  L DA
Sbjct:  351 PDMLGSTGSITITKEDTIILNGEGSKDAIAQRCEQIRSVISDPATSDYEKEKLQERLAKLSGGVAVIKVGGASEIEVGEKKDRVVDALNATRAAVEEGILPGGGTALLKAAANGLTSLNPTNFDQKLGISIIKNAITRPARTIVENSGLEGSVIVGKLTDDFAGDFNRGFDSARGEYVDMIGAGIVD-PLKVVRTALVDA 549          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_METVS (60 kDa chaperonin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=groL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.419e-27
Identity = 71/194 (36.60%), Postives = 107/194 (55.15%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS KKVKVT +  +I GG G +  I  R  Q+   I  +TS+YE   L+ERL  LS  VA++KVG AT  E                  +EEGI+ GGG  L+   +E+E    ++  E+IGV +++ A+  PL  IA  AG + S+V + +      + +D  ++EYVD +KS I+D P K+ ++ L ++ S
Sbjct:  315 LGSAKKVKVTKDNTLIIGGIGKEKDITSRISQIKTQISSTTSEYEKDSLKERLAKLSGGVAVIKVGSATETELKEKKLRIEDALNATKAAIEEGIVSGGGTVLIEILKEMESF-ELSGEERIGVNIVKKALTAPLKQIAENAGLEGSIVVEKVKNAESGIGFDAAKEEYVDMIKSGIID-PAKVTRSALQNSAS 506          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_EHRRI (60 kDa chaperonin OS=Ehrlichia risticii GN=groL PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.419e-27
Identity = 71/195 (36.41%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG+ K + ++ +   I  G G +  I+ R +Q+   I+ +TSDY+ + L+ERL  L+  VA+LKVGGAT  E                  +EEGI+PGGG  LL A   LEKL + +  E+ G+ +++ A+K P+  I   AG   SV+   LL  ++P+  +D    +YVDA K+ I+D P K+++  L+ AVS
Sbjct:  318 LGTAKSIIISKDSTTIVDGGGEKTSIDARVKQIKTQIDKTTSDYDKEKLQERLAKLAGGVAVLKVGGATEVEVKERKDRVEDALHATRAAVEEGIVPGGGATLLSAIAVLEKLSSDDDDEQAGINIVKSALKAPISQIVENAGEDASVITYNLLESKDPNRIFDARELKYVDAFKAGIID-PAKVVRVALESAVS 511          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH603_RHIEC (60 kDa chaperonin 3 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL3 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.419e-27
Identity = 71/196 (36.22%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  K+V +  +   I  G+G +  I+ R +Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL A   L  +   N     G+ ++  A++ P+  IA  AGF+ S +V +L G+ + +  +D   + YVD V++ IVD P K+++  L DA S
Sbjct:  316 MLGRAKRVLIEKDTTTIIDGTGEKAAIQARIQQMKAQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGATETEVKEKKDRIEDALNATRAAVEEGIVPGGGVALLRAKSALTGMVGENADVTAGISIVLRALEAPIRQIAENAGFEGSIIVGRLTGRNDHNQGFDAQTETYVDMVEAGIVD-PAKVVRTALQDAGS 510          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_COXB28.075e-2735.3860 kDa chaperonin OS=Coxiella burnetii (strain Cbu... [more]
CH60_COXB18.075e-2735.3860 kDa chaperonin OS=Coxiella burnetii (strain Cbu... [more]
CH602_BRAJA8.076e-2737.7660 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH60_GRAFK8.077e-2735.9060 kDa chaperonin OS=Gramella forsetii (strain KT0... [more]
CH60_DINSH8.077e-2736.0460 kDa chaperonin OS=Dinoroseobacter shibae (strai... [more]
CH60_THEBR8.078e-2737.0660 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
HSP60_PARBA9.419e-2739.00Heat shock protein 60, mitochondrial OS=Paracoccid... [more]
CH60_METVS9.419e-2736.6060 kDa chaperonin OS=Methanococcus vannielii (stra... [more]
CH60_EHRRI9.419e-2736.4160 kDa chaperonin OS=Ehrlichia risticii GN=groL PE... [more]
CH603_RHIEC9.419e-2736.2260 kDa chaperonin 3 OS=Rhizobium etli (strain CFN ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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