FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1794 contig Ccv1_Contig1794:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_ERYLH (60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.052e-26
Identity = 71/196 (36.22%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +  +   I  G+GN+  I+ R  Q+   IE +TSDY+ + L+ER+  L+  VA+++VGGAT  E                  +EEGI+PGGG+ALL A + L+ L A N  ++ G+ +++ A++ P   IA  AG     +V KLL  ++ +  ++    EY D VKS ++D P K+++  L DA S
Sbjct:  316 MLGRAKKVIIDKDNTTIVDGAGNKADIDARVSQIRAQIETTTSDYDREKLQERVAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRAAVEEGILPGGGIALLRALKSLDGLKAANDDQQSGIDIVRRALRAPARQIAENAGEDGAYIVGKLLEGDDYNHGFNAATGEYEDLVKSGVID-PAKVVRTALQDAAS 510          

HSP 2 Score: 20.7866 bits (42), Expect = 1.052e-26
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 2
Query:   89 KAIMRDIAILTGRN 130
            KA++ D+AILT  N
Sbjct:  286 KAMLEDVAILTAGN 299          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.052e-26
Identity = 66/195 (33.85%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  +KV+   ++  I GG GN+  IE R  Q+   +E + S+++ + L+ERL  L+  VA++KVG AT  E                  +EEGI+PGGGVAL+   + L+ +   N  E+IGV++++ ++ +PL  IA+ AG + S++ + + + +  + YD  RD +V+   + IVD P K+ ++ L +A S
Sbjct:  316 MLGRAEKVRANKDKTTIIGGKGNKKDIEARIAQIKKQLEETDSEFDREKLQERLAKLAGGVAVIKVGAATEVELKEKKHRIEDALSATKAAVEEGIVPGGGVALIRTIKALDDIKVDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDGPMGYDAARDRFVNMFDAGIVD-PCKVTRSALQNAAS 509          

HSP 2 Score: 22.3274 bits (46), Expect = 1.052e-26
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.052e-26
Identity = 71/196 (36.22%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEK-LPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG    V+V  +E II GG G+   I+ R  Q+   IE +TS+YE + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGV LL A + +EK +  +   EKIG +++  A+  P+  IA  AG+  +V +EK+L  ++P   +D  R EY +  +  I+D P K+ ++ L +A S
Sbjct:  315 LGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIID-PAKVTRSALQNAAS 509          

HSP 2 Score: 23.483 bits (49), Expect = 1.052e-26
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + E  KA+++DIAILTG
Sbjct:  279 FGERRKAMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.052e-26
Identity = 71/196 (36.22%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEK-LPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG    V+V  +E II GG G+   I+ R  Q+   IE +TS+YE + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGV LL A + +EK +  +   EKIG +++  A+  P+  IA  AG+  +V +EK+L  ++P   +D  R EY +  +  I+D P K+ ++ L +A S
Sbjct:  315 LGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIID-PAKVTRSALQNAAS 509          

HSP 2 Score: 23.483 bits (49), Expect = 1.052e-26
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + E  KA+++DIAILTG
Sbjct:  279 FGERRKAMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.052e-26
Identity = 71/196 (36.22%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEK-LPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG    V+V  +E II GG G+   I+ R  Q+   IE +TS+YE + L+ER+  L+  VA++KVG AT  E                  +EEGI+PGGGV LL A + +EK +  +   EKIG +++  A+  P+  IA  AG+  +V +EK+L  ++P   +D  R EY +  +  I+D P K+ ++ L +A S
Sbjct:  315 LGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIID-PAKVTRSALQNAAS 509          

HSP 2 Score: 23.483 bits (49), Expect = 1.052e-26
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + E  KA+++DIAILTG
Sbjct:  279 FGERRKAMLQDIAILTG 295          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_ELUMP (60 kDa chaperonin OS=Elusimicrobium minutum (strain Pei191) GN=groL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.230e-26
Identity = 73/195 (37.44%), Postives = 105/195 (53.85%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLGS K+V +      I  G G++  IE R EQ+   IE STSDY+ + L+ERL  LS  VA++ VG AT  E                  +EEG+IPGGGVAL      + KL A N   + G+ +++ A+  PLY IA  AG   SVV + +     +  +D    EYVD +K+ +VD  +K+++  L++A S
Sbjct:  314 MLGSAKRVVIDKENATIVSGEGDKKKIEARAEQIRKQIENSTSDYDKEKLQERLAKLSGGVAVISVGAATETEMKAKKAKVEDAKNATKAGVEEGLIPGGGVALTRCEGAVGKLKADNEDVQTGINIVKKALTAPLYQIAFNAGLDGSVVVENVRNAKGNQGFDADTGEYVDMIKAGVVD-AVKVVRIGLENAAS 507          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CHICK (60 kDa heat shock protein, mitochondrial OS=Gallus gallus GN=HSPD1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.230e-26
Identity = 67/195 (34.36%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  156 PLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDA 740
            P   G   +V VT ++ ++  G G +  IE R +++ + +E++TS+YE + L ERL  LS  VA+LKVGG +  E                  +EEGI+PGGG ALL     L+ L   N  +KIG+++++  +K+P  TIA  AG + S++ + + Q + ++ YD    E+V+ V+  I+D P K+++  L DA
Sbjct:  339 PHDFGKVGEVIVTKDDTMLLKGKGEKAQIEKRIQEIIEQLEVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVPGGGCALLRCIPALDALKPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKILQSSSEVGYDAMLGEFVNMVEKGIID-PTKVVRTALMDA 532          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH605_RHILO (60 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.368e-26
Identity = 71/196 (36.22%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV ++     I  G+G +  I+ R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL AS  +  + A N  +  G+ +++ A++ P   IA+ AG + S+V  K+L  +     Y+    EY D +   IVD P+K+++  L DA S
Sbjct:  316 MLGRAKKVSISKENTTIVDGAGKKAEIQGRVAQIKQQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLRASLSINAVGA-NSDQTAGISIVRRALQAPARQIAANAGAEASIVAGKILENKGATYGYNAQTGEYGDMIAMGIVD-PVKVVRTALQDAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 1.368e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_RHOPS (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.368e-26
Identity = 70/196 (35.71%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R +Q+   IE ++SDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL A + + ++   N   + G+ ++  A++ P+  IA  AG + S VV K+L  ++    +D   +EYVD +   IVD P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVNGAGKKADIEARVQQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVD-PAKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 1.368e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH603_BRASO (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ORS278) GN=groL3 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.368e-26
Identity = 70/196 (35.71%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL A + + ++   N   + G+ ++  A++ P+  IA  AG + S VV K+L +++    +D   ++YVD V   I+D P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRITNPNSDVQAGINIVLKALEAPMRQIAENAGVEGSIVVGKILEEKSETFGFDAQTEDYVDMVAKGIID-PAKVVRTALQDASS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 1.368e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_ERYLH1.052e-2636.2260 kDa chaperonin 1 OS=Erythrobacter litoralis (st... [more]
CH60_DICTD1.052e-2633.8560 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]
CH60_THESQ1.052e-2636.2260 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]
CH60_THEP11.052e-2636.2260 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
CH60_THEMA1.052e-2636.2260 kDa chaperonin OS=Thermotoga maritima GN=groL P... [more]
CH60_ELUMP1.230e-2637.4460 kDa chaperonin OS=Elusimicrobium minutum (strai... [more]
CH60_CHICK1.230e-2634.3660 kDa heat shock protein, mitochondrial OS=Gallus... [more]
CH605_RHILO1.368e-2636.2260 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=... [more]
CH602_RHOPS1.368e-2635.7160 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH603_BRASO1.368e-2635.7160 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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