FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_GLUOX (60 kDa chaperonin OS=Gluconobacter oxydans GN=groL PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.369e-26
Identity = 71/196 (36.22%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KK+ +      I  G+GN   I+ RC Q+   IE +TSDY+ + L+ERL  L+  VA+++VGG+T  E                  +EEGI+PGGG AL  AS  L+ L   N  +++G ++++ A++ PL  IA  AG   +V+  K+L  E     +D  + EY D V + I+D P K+++  L DA S
Sbjct:  316 MLGRAKKIHIEKENTTIVEGAGNSDDIKGRCNQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALARASSALKGLTFDNDDQRVGGEIVRKALQAPLRQIAFNAGEDGAVIAGKVLENEGYVFGFDAQKGEYKDLVAAGIID-PTKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 1.369e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_BRAJA (60 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groL1 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.369e-26
Identity = 71/196 (36.22%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I  G+G++  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+PGGGVALL   + L+ +  +N  +K GV +++ A+++P   I   AG   S VV KLL   + +  ++    EY D  K+ ++D P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVNGAGSKKDIEARVTQIKMQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRGLKALDAIKTVNADQKAGVDIVRRAIQVPARQIVQNAGEDGSLVVGKLLENSSYNWGFNAASGEYQDLAKAGVID-PAKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 1.369e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: HSP60_EMENI (Heat shock protein 60 OS=Emericella nidulans GN=hsp60 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.607e-26
Identity = 76/200 (38.00%), Postives = 112/200 (56.00%), Query Frame = 3
Query:  156 PLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAI-EMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEE-LEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLE--YDPPRDEYVDAVKSAIVDPPLKLIKNELDDA 740
            P MLGS   + +T  + II  G G++  I  RCEQ+   + + +TS+YE + L+ERL  LS  VA++KVGGA+  E                  +EEGI+PGGG ALL A+   LE +   N  +++GV +++ A+  P  TI   AG + SV V KL  + + D    +D  + EYVD + + IVD PLK+++  L DA
Sbjct:  347 PDMLGSTGSITITKEDTIILNGEGSKDAIAQRCEQIRGVMADPTTSEYEKEKLQERLAKLSGGVAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGILPGGGTALLKAAANGLENVKPANFDQQLGVSIVKSAITRPARTIVENAGLEGSVIVGKLTDEFSKDFNRGFDSAKGEYVDMIAAGIVD-PLKVVRTALVDA 545          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_RHILO (60 kDa chaperonin 1 OS=Rhizobium loti GN=groL1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.607e-26
Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  K+V +  +   I  G+G +  I+ R  Q+   IE +TSDY+ + L+ERL  LS  VA+++VGG T +E                  +EEGI+PGGGVALL A   L  L   N     G+ ++  A++ P+  IA  +G + S VV KL   ++ +L +D   + YVD +K+ IVD P K+++  L DA S
Sbjct:  316 MLGRAKRVLIEKDTTTIIDGAGTKATIQARVAQIKGQIEETTSDYDKEKLQERLAKLSGGVAVIRVGGVTESEVKEKKDRIDDALNATRAAVEEGIVPGGGVALLRARSALSGLNGANADVTAGISIVLRALEAPIRQIAENSGVEGSIVVGKLADSKDHNLGFDAQNETYVDMIKAGIVD-PAKVVRTALQDAGS 510          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_RHOPB (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.781e-26
Identity = 71/196 (36.22%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KK+ +      I GG+G +  IE R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL A + + ++   N   + G+ ++  A++ P+  IA  AG + S VV K+L  ++    +D   +EYVD +   IVD P K+++  L DA S
Sbjct:  316 MLGRAKKLVIDKENTTIVGGAGKKADIETRVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRISNDNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVD-PAKVVRTALQDASS 510          

HSP 2 Score: 21.1718 bits (43), Expect = 1.781e-26
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ D+AILTG
Sbjct:  286 KAMLEDLAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH604_RHILO (60 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.781e-26
Identity = 71/196 (36.22%), Postives = 105/196 (53.57%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV ++     I  G+G +  I+ R  Q+   IE +TSDY+ + L+ERL  L+  VA+++VGGAT  E                  +EEGI+ GGGVALL AS  + K    N  +  G+ +++ A++ P   IAS AG + S+V  K+L  +     Y+    EY D +   IVD P+K+++  L DA S
Sbjct:  316 MLGRAKKVSISKENTTIVDGAGKKAEIQGRVAQIKQQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVAGGGVALLRASANI-KAAGANADQAAGINIVRRALQAPARQIASNAGAEASIVAGKILENKGATFGYNAQTGEYGDMIAMGIVD-PVKVVRTALQDAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 1.781e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_BEII9 (60 kDa chaperonin OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=groL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.781e-26
Identity = 71/196 (36.22%), Postives = 104/196 (53.06%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  K++++      I  G+GN+  IE R  Q+   I  +TSDY+ + ++ERL  L+  VA+L+VGG+T  E                  +EEG+ PGGGVALL A + LE LP  N  +K G+++++ A++ P   I   +G     VV KLL        Y+    EY D VK  I+D P K+++  L DA S
Sbjct:  316 MLGRAKRIRIDKEATTIIDGAGNKDDIEGRISQIKAQIAETTSDYDREKMQERLAKLAGGVAVLRVGGSTEVEVKEKKDRVDDALNATRAAVEEGVSPGGGVALLRAIKALENLPTDNSDQKAGIEIVRKAIQTPAKQIVDNSGGDGAVVVGKLLESNEYAFGYNAQTGEYGDMVKLGIID-PTKVVRTALQDAAS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 1.781e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_RHOP2 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.781e-26
Identity = 70/196 (35.71%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG  KKV +      I GG+G +  IE R +Q+   IE ++SDY+ + L+ERL  L+  VA+++VGGAT  E                  ++EGI+PGGGVALL A + + ++   N   + G+ ++  A++ P+  IA  AG + S VV K+L  ++    +D   ++YVD +   IVD P K+++  L DA S
Sbjct:  316 MLGRAKKVVIDKENTTIVGGAGKKPDIEARVQQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRIHNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEDYVDMLAKGIVD-PAKVVRTALQDASS 510          

HSP 2 Score: 21.9422 bits (45), Expect = 1.781e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.781e-26
Identity = 70/197 (35.53%), Postives = 111/197 (56.35%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLE--YDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLGS KK+++T +E  I  G+G +  IE R  Q+   IE +TSDY+ + L+ER+  L+  VA+++VGG T  E                  ++EGI+ GGGVAL+ A + LE L   N  + +G+ +++ A++ PL  IA  AG   SVV   + +E+ DL+  ++   +EY D     ++D P K+++  L DA S
Sbjct:  316 MLGSAKKIQITKDETTIVDGAGEKAEIEARVAQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQAGKHLEGLTGDNNDQNVGISIVRKALEAPLRQIAENAGVDGSVVAGKI-RESDDLKFGFNAQTEEYGDMFAFGVID-PAKVVRTALQDAAS 510          

HSP 2 Score: 22.3274 bits (46), Expect = 1.781e-26
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_RHOMR (60 kDa chaperonin OS=Rhodothermus marinus GN=groL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.782e-26
Identity = 65/194 (33.51%), Postives = 110/194 (56.70%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  +++ V  +   I GG G+   I+ R  Q+   IE +TSDY+ + L+ERL  L+  VA+LK+G AT  E                  +EEGI+PGGGVA + A   L+K+   N  +KIGV+++Q A++ PL  IA+ AG++ S+V + + +   D  ++   +E+ + ++  ++D P K+ +  L++A S
Sbjct:  317 LGQAERIIVDKDNTTIVGGKGDPAQIKARANQIRQQIEETTSDYDREKLQERLAKLAGGVAVLKIGAATEPEMKEKKARVEDALHATRAAVEEGIVPGGGVAYIRAIAALDKVEVENEDQKIGVQIVQRALEEPLRQIAANAGWEGSIVVQRVKEGQGDFGFNAQTEEFGNLLEQGVID-PTKVARTALENAAS 509          

HSP 2 Score: 21.9422 bits (45), Expect = 1.782e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GLUOX1.369e-2636.2260 kDa chaperonin OS=Gluconobacter oxydans GN=groL... [more]
CH601_BRAJA1.369e-2636.2260 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]
HSP60_EMENI1.607e-2638.00Heat shock protein 60 OS=Emericella nidulans GN=hs... [more]
CH601_RHILO1.607e-2636.7360 kDa chaperonin 1 OS=Rhizobium loti GN=groL1 PE=... [more]
CH602_RHOPB1.781e-2636.2260 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH604_RHILO1.781e-2636.2260 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=... [more]
CH60_BEII91.781e-2636.2260 kDa chaperonin OS=Beijerinckia indica subsp. in... [more]
CH601_RHOP21.781e-2635.7160 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH602_ROSDO1.781e-2635.5360 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH60_RHOMR1.782e-2633.5160 kDa chaperonin OS=Rhodothermus marinus GN=groL ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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