FC924903

Overview
NameFC924903
Unique NameFC924903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14166 contig Ccv1_Contig14166:960..1549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.340e-55
Identity = 105/141 (74.47%), Postives = 120/141 (85.11%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKNVSVKD++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  304 PGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.340e-55
Identity = 105/141 (74.47%), Postives = 120/141 (85.11%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKNVSVKD++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  304 PGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.340e-55
Identity = 105/141 (74.47%), Postives = 120/141 (85.11%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKNVSVKD++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  304 PGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.056e-55
Identity = 99/140 (70.71%), Postives = 122/140 (87.14%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 422
            PG   GFNVKNVSVK+++RG VA +SK+DP  GA++F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+E+L KIDRR+GK +E+ PKF+K+GDA  VKM+P+KPM VE F+EYPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  303 PGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPMGAASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLQKIDRRTGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.056e-55
Identity = 99/142 (69.72%), Postives = 121/142 (85.21%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 428
            PG   GFNVKNVSVK+++RG VA +SK+DP KG  +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+E++ KIDRR+GK +E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV K D
Sbjct:  303 PGDNVGFNVKNVSVKEVRRGNVAGDSKNDPPKGCESFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSVIKSD 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 3.991e-55
Identity = 99/145 (68.28%), Postives = 122/145 (84.14%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVK+++RG V  +SK+DP KG  +FT+QVI++NHPGQI  GY+PVLDCHT+HIA KF  +L KIDRR+GK++E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K D +G
Sbjct:  302 PGDNVGFNVKNVSVKEIRRGNVCGDSKNDPPKGCDSFTAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLLEKIDRRTGKKMEDNPKFVKSGDASIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 446          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.991e-55
Identity = 99/145 (68.28%), Postives = 122/145 (84.14%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVK+++RG V  +SK+DP KG  +F +QVI++NHPGQI  GY+PVLDCHT+HIA KF  ++ KIDRR+GK+LE+ PKF+K+GDA  VKM+PTKPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K D +G
Sbjct:  302 PGDNVGFNVKNVSVKEIRRGNVCGDSKNDPPKGCDSFNAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLVEKIDRRTGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 446          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 6.807e-55
Identity = 104/141 (73.76%), Postives = 119/141 (84.40%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKNVSVKD++RG VA +SK+DP   A+NF +QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKSV+KK
Sbjct:  304 PGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 6.807e-55
Identity = 103/144 (71.53%), Postives = 121/144 (84.03%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 434
            PG   GFNVKNVSVKD++RG V S+SK DPAK A  F +QVIIMNHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE+F++Y PLGRFAVRDMRQTVAVGVIKSV+K D S
Sbjct:  304 PGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGS 447          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.516e-54
Identity = 104/141 (73.76%), Postives = 119/141 (84.40%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKNVSVKD++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPV DCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  304 PGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
The following BLAST results are available for this feature:
BLAST of FC924903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A1_FELCA2.340e-5574.47Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1... [more]
EF1A1_CRIGR2.340e-5574.47Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]
EF1A1_BOVIN2.340e-5574.47Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A... [more]
EF1A_PODAN3.056e-5570.71Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_AJECG3.056e-5569.72Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_PICGU3.991e-5568.28Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A_CANAL3.991e-5568.28Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A_DANRE6.807e-5573.76Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A_CAEEL6.807e-5571.53Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A1_HORSE1.516e-5473.76Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM24FM1 TF Citrus clementina cDNA clone KN0AAP6YM24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924903 ID=FC924903; Name=FC924903; organism=Citrus clementina; type=EST; length=590bp
TTCCTGGTGCTTATGAGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGAT
CTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAAGGG
GGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCCAGA
TTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATAGCT
GTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGA
GCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTGTTA
AGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATATCCC
CCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCGCTGTTGG
AGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAGCCAAGGTAACCA
AGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCTTTGTCTGCAAGT
AATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCTTTTTAGGCATAA
ATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATAAT
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