FC924906

Overview
NameFC924906
Unique NameFC924906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_ACIF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.027e-24
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  172 HVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            H +G+PR+G KRELK ALESFW  +    ELQ+ AA LR   W      G+  +P   FS YD +LD +  LGA+PPRY + GG++G D +F+MARG+A+ PA
Sbjct:    5 HSLGFPRIGHKRELKKALESFWSREIDEQELQSRAAQLRDRHWRIQQTCGMDLVPVGDFSLYDHMLDMSCTLGAIPPRYGFAGGQVGLDTFFAMARGSATQPA 107          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_ACIF2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.027e-24
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  172 HVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            H +G+PR+G KRELK ALESFW  +    ELQ+ AA LR   W      G+  +P   FS YD +LD +  LGA+PPRY + GG++G D +F+MARG+A+ PA
Sbjct:    5 HSLGFPRIGHKRELKKALESFWSREIDEQELQSRAAQLRDRHWRIQQTCGMDLVPVGDFSLYDHMLDMSCTLGAIPPRYGFAGGQVGLDTFFAMARGSATQPA 107          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_STRGG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=metE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.575e-24
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  160 AMASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASV 474
            A  + V GYPR GP RELK A+E +W G+  AD L+  AA+LR   W Q+A+AG+  +P+  FSYYD VLDT+ M+GAVP R+  +      D YF+MARG   V
Sbjct:    9 AARATVYGYPRQGPHRELKKAIEGYWKGRVDADALRETAAELRRGTWQQLAEAGVHEVPTGDFSYYDHVLDTSVMVGAVPERHRASVEADALDGYFAMARGTQDV 113          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_NITWN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=metE PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.463e-23
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  178 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARG 462
            +G PR+GP+RELK ALES+W GKS    L   AA LRA+ W +    G+  IPSN F++YD VLDT+ M+GA+P  Y W  G +    YF+MARG
Sbjct:    4 LGTPRIGPRRELKTALESYWSGKSDESALLEAAAGLRAANWARQKSLGVTVIPSNDFTFYDHVLDTSVMVGAIPDIYGWKSGPVPLATYFAMARG 98          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_PELCD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metE PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.258e-23
Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  163 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNA 468
            M +H +G+PRMG  RELK  LES+W G    ++L     +LR   W     AGI  +P   FSYYD +LD  AMLGAVPPR+ W G  +  D YF MARG++
Sbjct:    1 MLTHTLGFPRMGAHRELKKNLESYWKGAIGQEKLMASGRELRLRHWRLQQQAGIDLVPVGDFSYYDHMLDMVAMLGAVPPRFGWQGESVDLDTYFYMARGSS 102          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_RHOSR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodococcus sp. (strain RHA1) GN=metE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.256e-23
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:  175 VVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASV 474
            V+G PR+GP RELK A+ES+W G+  A+ L  +A DLR   W  + DAG+  +P NTFSYYD VLDT AMLGA+P R +  G E   D YF+ ARGN +V
Sbjct:    9 VLGSPRIGPNRELKKAVESYWAGRLDAEGLDALARDLRRRTWTSLRDAGLDSVPVNTFSYYDHVLDTAAMLGALPDRVA--GIESDLDRYFAAARGNDTV 106          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_MESSB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=metE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.256e-23
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  178 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGN 465
            +G PR+G +RELKFALE++W G+SS  EL   AA +RA  W+    AG   IPSN F+ YD VLD    LGA+P  Y W GG +  D YF+MARG+
Sbjct:    9 LGVPRIGRRRELKFALEAYWGGESSEGELLAAAAKIRAENWSLQKAAGASIIPSNDFTLYDHVLDMAVTLGAIPEIYGWAGGAVPLDTYFAMARGS 104          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_BRAJA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bradyrhizobium japonicum GN=metE PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 4.256e-23
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  178 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGN 465
            +G PR+GP+RELK ALES+W GK S  +L   A  LRA+ W +    G+  IPSN FS YDQVLDT+ M+GA+P  Y+ NG  +    YF+MARG+
Sbjct:   11 LGTPRIGPRRELKLALESYWAGKISEQQLHEDAFGLRAANWARQKSLGVTIIPSNDFSLYDQVLDTSVMVGAIPEIYAANGESVSLQTYFAMARGS 106          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_BURXL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia xenovorans (strain LB400) GN=metE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.558e-23
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  169 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            +H+ G+PR+G +RELKFA ESFW G+S    L+ VA +LRA  W    DAG+ F+    F+YYDQ+L+ +A+LGA+P R+ +    +    Y+ +ARGNA+ PA
Sbjct:    4 THIPGFPRIGAQRELKFAQESFWRGESGEPHLRGVARELRARHWQLQQDAGLDFVTVGDFAYYDQMLNLSALLGALPQRFGFEPKTLSLAEYYELARGNAAQPA 107          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_RALPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia pickettii (strain 12J) GN=metE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.238e-22
Identity = 50/99 (50.51%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  172 HVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNA 468
            H +GYPR+G +RELKFALESFW G SS D+L+   + LRA  W    DAG+ F+    F++YDQV  T A+LGAVP RY ++  ++     F +ARGNA
Sbjct:    5 HTLGYPRIGAQRELKFALESFWKGASSEDDLRATGSALRARHWAAQRDAGLDFVTVGDFAWYDQVQQTAALLGAVPTRYGFDPAQLTLAQSFVLARGNA 103          
The following BLAST results are available for this feature:
BLAST of FC924906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
METE_ACIF55.027e-2449.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF25.027e-2449.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRGG8.575e-2449.525-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITWN1.463e-2351.585-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PELCD3.258e-2348.045-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOSR4.256e-2354.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESSB4.256e-2352.085-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BRAJA4.256e-2352.085-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURXL5.558e-2346.155-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALPJ1.238e-2250.515-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL18FM1 TF Citrus clementina cDNA clone KN0AAP1YL18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924906 ID=FC924906; Name=FC924906; organism=Citrus clementina; type=EST; length=481bp
TATCCATATCTTTTTCAAAAACGTCTCCGCTTTTCTCATTCCTTCGCTGC
TCCTTCCGTCGCACTCGTTTCAGGTTCTTCAGATTGTCGCAAATTTCTTT
CTGGGTCTTTTTTTTTTAAGGTTGTGAATTTTGGGTTAATTGTTTTGGGG
TGTTGCAGAGCAATGGCGTCGCATGTAGTGGGGTACCCTCGAATGGGACC
GAAGAGAGAGTTGAAGTTCGCGCTGGAGTCATTCTGGGACGGGAAGAGCA
GCGCCGATGAGTTGCAGAACGTGGCGGCTGATTTGAGAGCATCAATTTGG
AATCAAATGGCTGATGCTGGCATCAAGTTTATCCCCAGCAATACTTTCTC
TTACTACGATCAAGTGTTGGACACCACGGCCATGCTCGGTGCTGTGCCGC
CTAGGTACAGTTGGAACGGTGGCGAGATTGGTTTCGATGTTTATTTCTCT
ATGGCTCGAGGTAACGCCTCTGTTCCCGCCA
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