FC924906

Overview
NameFC924906
Unique NameFC924906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1796 contig Ccv1_Contig1796:1..481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_STAEQ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=metE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.737e-11
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  178 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGN 465
            +G+PR+G KRE K A+E++W  K    EL     DL         +  +  IP   FS YD +LDT+ +   +P R+   G E+  D+ F +ARGN
Sbjct:    9 LGFPRLGRKREWKKAIENYWAHKIDKAELDQTLTDLHKENLLLQKNYHLDSIPVGDFSLYDHILDTSLLFNIIPERF--QGREVNDDLLFDIARGN 102          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_LACPL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Lactobacillus plantarum GN=metE PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.325e-11
Identity = 35/101 (34.65%), Postives = 50/101 (49.50%), Query Frame = 1
Query:  178 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            +GYPR+G  RE K  LE FW G+         A  LR +   +  D G+ +IP    S YD VLDT     A+P R+     ++    Y+++ARG  +  A
Sbjct:    8 LGYPRLGEHREWKHLLEHFWKGQLDNVTFHATAKKLRLANLKKQRDLGVDYIPVADNSDYDHVLDTLVAFNAIPSRFGHFDHQLDLPDYYAIARGTDTAVA 108          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_HERA2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=metE PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.325e-11
Identity = 43/105 (40.95%), Postives = 52/105 (49.52%), Query Frame = 1
Query:  175 VVGYPRMGPKRELKFALESFWDGKSSADELQNVAADL---RASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            VVGYPR+G  R  K ALE FW GK      +    +L   R +   Q  D     +P   FS YD VLDT  MLGAVP R+           YF++ARG   +PA
Sbjct:    7 VVGYPRVGVGRPYKQALERFWSGKLDETGFRAAINELCHDRLATQAQRLD----LVPVGDFSLYDHVLDTALMLGAVPARFGKVDAH-NLQGYFALARGRDGLPA 106          
The following BLAST results are available for this feature:
BLAST of FC924906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
METE_STAEQ3.737e-1136.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LACPL8.325e-1134.655-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HERA28.325e-1140.955-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL18FM1 TF Citrus clementina cDNA clone KN0AAP1YL18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924906 ID=FC924906; Name=FC924906; organism=Citrus clementina; type=EST; length=481bp
TATCCATATCTTTTTCAAAAACGTCTCCGCTTTTCTCATTCCTTCGCTGC
TCCTTCCGTCGCACTCGTTTCAGGTTCTTCAGATTGTCGCAAATTTCTTT
CTGGGTCTTTTTTTTTTAAGGTTGTGAATTTTGGGTTAATTGTTTTGGGG
TGTTGCAGAGCAATGGCGTCGCATGTAGTGGGGTACCCTCGAATGGGACC
GAAGAGAGAGTTGAAGTTCGCGCTGGAGTCATTCTGGGACGGGAAGAGCA
GCGCCGATGAGTTGCAGAACGTGGCGGCTGATTTGAGAGCATCAATTTGG
AATCAAATGGCTGATGCTGGCATCAAGTTTATCCCCAGCAATACTTTCTC
TTACTACGATCAAGTGTTGGACACCACGGCCATGCTCGGTGCTGTGCCGC
CTAGGTACAGTTGGAACGGTGGCGAGATTGGTTTCGATGTTTATTTCTCT
ATGGCTCGAGGTAACGCCTCTGTTCCCGCCA
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