FC924906

Overview
NameFC924906
Unique NameFC924906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1796 contig Ccv1_Contig1796:1..481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_MYCA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium avium (strain 104) GN=metE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.145e-22
Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  157 RAMASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASV 474
            +A  + VVG PR+GPKRELK A E +W G++   EL+ VAA LR   W  +A AG+  +P NTFSYYDQ+LDT  ML A+P R      ++  D YF+ ARGN+ V
Sbjct:    4 QAFTATVVGSPRIGPKRELKRATEGYWAGRTGRAELEKVAATLRRDTWAGLAAAGLDSVPVNTFSYYDQMLDTAVMLDALPERARQVSDDL--DRYFAAARGNSDV 107          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_BURPP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.026e-22
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  169 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            +H+ G+PR+G +RELKFA ESFW G+S    L  VA +LRA  W    DA + F+    F+YYDQ+L+ +A+LGA+P R+ ++   +    Y+ +ARGNA+ PA
Sbjct:    4 THIPGFPRIGAQRELKFAQESFWRGESDEQYLLGVARELRARHWQLQQDAKLDFVTVGDFAYYDQMLNLSALLGALPQRFGFDAKTLSLARYYELARGNAAQPA 107          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_STRAW (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces avermitilis GN=metE PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.788e-21
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  160 AMASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASV 474
            A  + V GYPR G  RELK A+E +W G+  AD L+  A  LR   W Q+A+AGI  +P+  FSYYD VLDT+ M+GA+P R+         D YF+MARG   V
Sbjct:    9 AARATVYGYPRQGRGRELKKAIEGYWKGRLDADALRTTATGLRRDTWQQLAEAGIHEVPTGDFSYYDHVLDTSVMVGAIPARHRAAVEADALDGYFAMARGTQDV 113          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_CHRSD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metE PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.788e-21
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  169 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNA 468
            +H++GYPR+G  RELK A+E++W G     EL+     LRA  W    DAG+ F+    F++YDQVL+ +AMLGAVPPR+    G++  D  F MARG A
Sbjct:    4 AHILGYPRIGANRELKKAVEAYWKGDIDQAELERRGQALRAEHWQASRDAGLDFVTVGDFAFYDQVLNVSAMLGAVPPRFGAIDGDVDLDTTFRMARGRA 103          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_NITEU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrosomonas europaea GN=metE PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  169 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            +H +G+PR+G +RELK ALE++W G++  D+L   A  +R   W     AGI  IP   FS YD +LD T +LGA+P R+   G +I  D+YF+MARG A  PA
Sbjct:    5 THNLGFPRIGAQRELKKALETYWKGQNDVDQLLATARAIRTGNWLLQQKAGIDLIPVGDFSLYDHILDMTTLLGAIPHRFGNTGDKISPDLYFAMARGTADQPA 108          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_ACICJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidiphilium cryptum (strain JF-5) GN=metE PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.794e-21
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  178 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARG 462
            +G+PR+G +RELK ALE+ W G+ S   LQ  A  LRA   +     GI  IPSN F+ YD VLDT  M+GA+PP Y W GGE+    YF++ARG
Sbjct:    7 LGFPRIGRRRELKSALEAHWAGELSEAGLQEAARLLRAESHSLQQGLGIGHIPSNDFALYDHVLDTACMVGAIPPGYGWRGGEVTLPTYFALARG 101          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_FLAJ1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=metE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.873e-21
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  163 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRY-SWNGGEIGFDVYFSMARGN 465
            M ++ +GYPR+G  RELK A E +W GK SADEL +   ++R   W   ++AG+  IPSN FS+YDQVLD T  +GA+P RY          D+YF+MARG+
Sbjct:    1 MKTNNLGYPRIGSNRELKKASELYWAGKISADELLDAGKEIRLKNWYLQSEAGVDLIPSNDFSFYDQVLDLTLAVGAIPQRYHELAKSNSSLDLYFAMARGS 102          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_ALHEH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.159e-20
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  169 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNA 468
            +HV+GYPR+G +RELK A E++W G+    EL+    +LRA  W    DAG+ ++    F++YD VL+ +A+LGAVPPR+   G  +  D  F MARG A
Sbjct:    4 THVLGYPRIGARRELKRATEAYWKGEIDQAELERTGRELRARHWQAQRDAGLDWVTVGDFAFYDHVLNVSALLGAVPPRFGDAGETVDLDTTFRMARGRA 103          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_PROMH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Proteus mirabilis (strain HI4320) GN=metE PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.977e-20
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  169 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNA 468
            +H +G+PR+G  RELK A ES+W G  S  EL  V  +LRA  W Q A+AG++ +P   F++YDQVL T+ +LG +PPR+    G +  D  F +ARG A
Sbjct:    5 NHTLGFPRIGLNRELKKAQESYWAGNISQAELLAVGKELRARHWQQQANAGVELLPVGDFAWYDQVLGTSLLLGNIPPRHRNEDGRLDLDTLFRVARGRA 104          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_VIBPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Vibrio parahaemolyticus GN=metE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.582e-20
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  160 AMASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNA 468
            A  +H++GYPR+G KRELKFA E +W G     EL+ V ADLRA  W    +AG+ F  +  F++YD VL TT +LG VP R++  GG    D  F + RG +
Sbjct:    2 ATTTHILGYPRIGEKRELKFAQEKYWRGDIDQTELKKVGADLRAKNWQTQTEAGLSFTTAGDFAWYDHVLTTTLLLGHVPKRHA--GGFPNLDTLFKVGRGQS 102          
The following BLAST results are available for this feature:
BLAST of FC924906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
METE_MYCA16.145e-2250.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPP8.026e-2245.195-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRAW1.788e-2147.625-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHRSD1.788e-2147.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITEU2.335e-2146.155-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACICJ6.794e-2150.535-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_FLAJ18.873e-2148.045-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ALHEH1.159e-2045.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PROMH1.977e-2046.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_VIBPA2.582e-2045.635-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL18FM1 TF Citrus clementina cDNA clone KN0AAP1YL18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924906 ID=FC924906; Name=FC924906; organism=Citrus clementina; type=EST; length=481bp
TATCCATATCTTTTTCAAAAACGTCTCCGCTTTTCTCATTCCTTCGCTGC
TCCTTCCGTCGCACTCGTTTCAGGTTCTTCAGATTGTCGCAAATTTCTTT
CTGGGTCTTTTTTTTTTAAGGTTGTGAATTTTGGGTTAATTGTTTTGGGG
TGTTGCAGAGCAATGGCGTCGCATGTAGTGGGGTACCCTCGAATGGGACC
GAAGAGAGAGTTGAAGTTCGCGCTGGAGTCATTCTGGGACGGGAAGAGCA
GCGCCGATGAGTTGCAGAACGTGGCGGCTGATTTGAGAGCATCAATTTGG
AATCAAATGGCTGATGCTGGCATCAAGTTTATCCCCAGCAATACTTTCTC
TTACTACGATCAAGTGTTGGACACCACGGCCATGCTCGGTGCTGTGCCGC
CTAGGTACAGTTGGAACGGTGGCGAGATTGGTTTCGATGTTTATTTCTCT
ATGGCTCGAGGTAACGCCTCTGTTCCCGCCA
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