FC924907

Overview
NameFC924907
Unique NameFC924907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.241e-19
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = -1
Query:  211 KKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIE 459
            +KLVVVDF+A+WCGPC+ I P    L++K  NV+FL+VDVD+ + VA E  V+ MPTF F K+G+ VD+  GA KE+L+ TI+
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATIK 102          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.161e-19
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = -1
Query:  208 KKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEK 459
            +KLVVVDF+A+WCGPC+ I P    L++K  NV+FL+VDVD+ + VA E  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATINE 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 6.161e-19
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = -1
Query:  208 KKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEK 459
            +KLVVVDF+A+WCGPC+ I P    L++K  NV+FL+VDVD+ + VA E  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 6.161e-19
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = -1
Query:  208 KLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEK 456
            KLVVVDF+A+WCGPC+ I P    L++K  NV+FL+VDVD+ + VA E  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 6.161e-19
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = -1
Query:  208 EAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEK 498
            +A+ + L+   +  KLVVVDF+A+WCGPC+ I P    L++K  NV+FL+VDVD+ + VA E  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:    9 DAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 8.046e-19
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = -1
Query:  208 KLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEK 456
            KLVVVDF+A+WCGPC+ I P    L++K  NV+FL+VDVD+ + VA E  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 8.046e-19
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = -1
Query:  208 KKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEK 459
            +KLVVVDF+A+WCGPC+ I P    L++K  NV+FL+VDVD+ + VA E  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.372e-18
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = -1
Query:  208 KLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEK 456
            KLVVVDF+A+WCGPC+ I P    L++K  NV+F++VDVD+ K +A E  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  205 KLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGK-LVDKVVGAKKEELQLTIEKH 456
            KLVV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    AE   ++AMPTF F K GK L D V GA +  L+  I+K+
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.057e-18
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  202 EAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKHA 498
            EA+ + L    +  KLVVVDF+A+WCGPC+ I P    L  K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI + A
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA 105          
The following BLAST results are available for this feature:
BLAST of FC924907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO_HORSE1.241e-1954.22Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_SHEEP6.161e-1952.38Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_PIG6.161e-1952.38Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_HUMAN6.161e-1953.01Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_CALJA6.161e-1947.42Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_MACMU8.046e-1953.01Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_BOVIN8.046e-1952.38Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_RABIT1.372e-1851.81Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_GEOCY2.341e-1856.47Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
THIO_RAT3.057e-1847.47Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL19FM1 TF Citrus clementina cDNA clone KN0AAP1YL19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924907 ID=FC924907; Name=FC924907; organism=Citrus clementina; type=EST; length=594bp
TTTTTTTTTTTACTTCACATTACTTAAATCCATAAATATTAAAAGGTAAA
ATGTAGCTGCATACAACAAGCACACATTTTAGACATCTACTACCAGAGTA
GTAGTAGCTCAGTTCTTATCATCAAATGAAAACTAGAAAACACTCATACA
GTACTGAGGTTCATATATTCTCCTCCATATTACATTTCATTCAACAGAAG
TGGCATGCTTTTCTATAGTCAGCTGCAACTCCTCTTTCTTTGCACCCACA
ACCTTGTCCACTAATTTGCCTTCTTTCAAGAACAAAAAGGTTGGCATTGC
CTCCACAGCCCATTCCTCAGCTACGGTCTTCAATTCATCCACATCAACCT
TCAGGAATAAGACATTAGGAGTCTTCTTAGCAAGCTCTGCCAGAACTGGG
GCAATGAAACGGCATGGTCCACACCATGAAGCCGTGAAATCCACCACCAC
CAGTTTCTTAGCCTCGTTTCCCTTCTCAAGTTGCTGAGTCCAAGCCTCAA
CAGTGTGGCAGCCAATCACTTGGTTCTCTTCAGCCATTTTTGTTTTCTTT
GTTGGTAAGTAAGCTGAGATTCGCAGGTAAAATGTTTCCTCGTG
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