FC924907

Overview
NameFC924907
Unique NameFC924907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  205 VVDFTASWCGPCRFIAPVLAELAKKTPNVL-FLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAK-KEELQLTIEKH 447
            +VDF A+WCGPC+ IAPVL ELA         LK+DVDE  + A ++ V ++PT +  K+G+ VDKVVG + KE L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  205 VVDFTASWCGPCRFIAPVLAELAKKTPNVL-FLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAK-KEELQLTIEKH 447
            +VDF A+WCGPC+ IAPVL ELA         LK+DVDE  + A ++ V ++PT +  K+G+ VDKVVG + KE L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  205 VVDFTASWCGPCRFIAPVLAELAKKTPNVL-FLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAK-KEELQLTIEKH 447
            +VDF A+WCGPC+ IAPVL ELA         LK+DVDE  + A ++ V ++PT +  K+G+ VDKVVG + KE L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  205 VVDFTASWCGPCRFIAPVLAELAKKTPNVL-FLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAK-KEELQLTIEKH 447
            +VDF A+WCGPC+ IAPVL ELA         LK+DVDE  + A ++ V ++PT +  K+G+ VDKVVG + KE L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  205 VVDFTASWCGPCRFIAPVLAELAKKTPNVL-FLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAK-KEELQLTIEKH 447
            +VDF A+WCGPC+ IAPVL ELA         LK+DVDE  + A ++ V ++PT +  K+G+ VDKVVG + KE L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  205 VVDFTASWCGPCRFIAPVLAELAKKTPNVL-FLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAK-KEELQLTIEKH 447
            +VDF A+WCGPC+ IAPVL ELA         LK+DVDE  + A ++ V ++PT +  K+G+ VDKVVG + KE L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  205 VVDFTASWCGPCRFIAPVLAELAKKTPNVL-FLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAK-KEELQLTIEKH 447
            +VDF A+WCGPC+ IAPVL ELA         LK+DVDE  + A ++ V ++PT +  K+G+ VDKVVG + KE L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  205 VVDFTASWCGPCRFIAPVLAELAKKTPNVL-FLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAK-KEELQLTIEKH 447
            +VDF A+WCGPC+ IAPVL ELA         LK+DVDE  + A ++ V ++PT +  K+G+ VDKVVG + KE L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  205 VVDFTASWCGPCRFIAPVLAELAKKTPNVL-FLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAK-KEELQLTIEKH 447
            +VDF A+WCGPC+ IAPVL ELA         LK+DVDE  + A ++ V ++PT +  K+G+ VDKVVG + KE L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 36/88 (40.91%), Postives = 60/88 (68.18%), Query Frame = -1
Query:  205 EAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQL-TIEKH 465
            +++KLV+VDF A WCGPCR I P+L E+AK+  N+  ++V+ DE   +A  + + ++PT +  K+G+ VD V+GA  + + + TI K+
Sbjct:   15 QSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKY 101          
The following BLAST results are available for this feature:
BLAST of FC924907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO_STAAU2.961e-1348.19Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS2.961e-1348.19Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR2.961e-1348.19Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN2.961e-1348.19Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM2.961e-1348.19Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC2.961e-1348.19Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB2.961e-1348.19Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA82.961e-1348.19Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA32.961e-1348.19Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_CYAME2.961e-1340.91Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL19FM1 TF Citrus clementina cDNA clone KN0AAP1YL19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924907 ID=FC924907; Name=FC924907; organism=Citrus clementina; type=EST; length=594bp
TTTTTTTTTTTACTTCACATTACTTAAATCCATAAATATTAAAAGGTAAA
ATGTAGCTGCATACAACAAGCACACATTTTAGACATCTACTACCAGAGTA
GTAGTAGCTCAGTTCTTATCATCAAATGAAAACTAGAAAACACTCATACA
GTACTGAGGTTCATATATTCTCCTCCATATTACATTTCATTCAACAGAAG
TGGCATGCTTTTCTATAGTCAGCTGCAACTCCTCTTTCTTTGCACCCACA
ACCTTGTCCACTAATTTGCCTTCTTTCAAGAACAAAAAGGTTGGCATTGC
CTCCACAGCCCATTCCTCAGCTACGGTCTTCAATTCATCCACATCAACCT
TCAGGAATAAGACATTAGGAGTCTTCTTAGCAAGCTCTGCCAGAACTGGG
GCAATGAAACGGCATGGTCCACACCATGAAGCCGTGAAATCCACCACCAC
CAGTTTCTTAGCCTCGTTTCCCTTCTCAAGTTGCTGAGTCCAAGCCTCAA
CAGTGTGGCAGCCAATCACTTGGTTCTCTTCAGCCATTTTTGTTTTCTTT
GTTGGTAAGTAAGCTGAGATTCGCAGGTAAAATGTTTCCTCGTG
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