FC924920

Overview
NameFC924920
Unique NameFC924920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.587e-57
Identity = 107/200 (53.50%), Postives = 142/200 (71.00%), Query Frame = 3
Query:  102 LIFSL-FVGLLMVGLVSSAK------FDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            L+FS+  + L ++GL    +      F   Y+ SWA +H++Y   G T+ L LD  SGAGF SK  YLFG  S+++KLVGGDSAG VTAFY+SS+   H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H+YS+LWN  Q+V  VD+ PIR   N +  G+ FP +Q M +YSS+W+ADDWAT+GG
Sbjct:    6 LLFSIVLINLSLLGLCGYPRKPVDVPFWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGG 205          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 3.596e-56
Identity = 102/196 (52.04%), Postives = 137/196 (69.90%), Query Frame = 3
Query:   96 MSLIFSLFVGLL-MVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            +SL+F+L V    +   V +  FD  +  +W      V  +G+ L L+LD  SG+GF +K +YLFGK+ +Q+KLV G+SAGTVTA+Y+ S G   +E DFEFLGN TG+PY + TNVY  G G+REQ+  LWFDPT +FHTYS+LWN   +VF+VD+ P+R   NL+H GI +PK Q M +YSS+WNAD WAT+GG
Sbjct:    8 LSLLFTLTVSTTTLFSPVFAGTFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGG 203          

HSP 2 Score: 23.8682 bits (50), Expect = 3.596e-56
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG VKTDW    F
Sbjct:  201 RGGLVKTDWSKAPF 214          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.967e-56
Identity = 99/190 (52.11%), Postives = 132/190 (69.47%), Query Frame = 3
Query:  114 LFVGLLMVGLVSSAKFDDLYQTSWAFN--HVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            L + LL++  +S+  F D +  +W     ++   G  L   LD  SG+GF SK +YLFGK+ +++KLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG+PY++ TNV+  G GNRE +  LWFDPT +FHTY++LWN   ++FLVD  PIRV  N E  G+ +PK Q M +YSS+W ADDWATQGGK
Sbjct:   11 LLLSLLLLISLSAGSFYDNFDITWGNGRANIVESGQLLTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGK 200          

HSP 2 Score: 24.2534 bits (51), Expect = 7.967e-56
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            +GGKVKTDW    F
Sbjct:  197 QGGKVKTDWTNAPF 210          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.039e-55
Identity = 100/190 (52.63%), Postives = 129/190 (67.89%), Query Frame = 3
Query:  114 LFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            L   LL++  V++  F D +  +W          G  L   LD  SG+GF SK +YLFGK+ ++IKLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG+PY++ TNV+  G GNRE +  LWFDPT +FHTY++LWN   ++FLVD  PIRV  N E  G+ +PK Q M +YSS+W ADDWATQGGK
Sbjct:   12 LLASLLILIGVATGSFYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGK 201          

HSP 2 Score: 24.2534 bits (51), Expect = 1.039e-55
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            +GGKVKTDW    F
Sbjct:  198 QGGKVKTDWTNAPF 211          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.968e-55
Identity = 98/170 (57.65%), Postives = 127/170 (74.71%), Query Frame = 3
Query:  171 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            Y+ SWA +H+++   G T  L LD  SGAGF SK  YLFG  S++++LVGGDSAG VTAFY+SS+   H+E DFEFLGN TG+PY++QTNV+  G GNREQR+ LWFDPTK +H+YS+LWN   +V  VD+ PIR   N +  G+ FP +Q M +YSS+W+ADDWAT+GG
Sbjct:   37 YEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGG 206          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.571e-55
Identity = 100/193 (51.81%), Postives = 142/193 (73.58%), Query Frame = 3
Query:  105 IFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN-HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            IF+L   + +      A F + ++ +W+ +H++   DG  ++L LD  +G GFASK KYLFG+VS++IKL+ GDSAGTVTAFYM+SD     +E DFEFLGN +G+PY VQTN++ +G G+REQR++LWFDP+ ++HTY++LW+ + +VF VD+ PIR + N E K I +P  Q MGVYS++W ADDWAT+GG
Sbjct:   17 IFTLLTLMFIRVSARPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGG 209          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 3.000e-55
Identity = 102/199 (51.26%), Postives = 139/199 (69.85%), Query Frame = 3
Query:   84 SMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            +M+  S I    +   M+  VS A F    + +W     Q   +GD L L+LD  SG+GF SK++YLFGK+ +QIKLV G+SAGTVTA+Y+ S G   +E DFEFLGN +G+PY + TNV+  G G+REQ+  LWFDPT +FHTYS+LWN ++++F VD TPIR   N+E +G  FPK+Q M +YSS+WNA++WAT+GG
Sbjct:    2 AMISYSTIVVALLASFMICSVS-ANFQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAEEWATRGG 199          

HSP 2 Score: 23.8682 bits (50), Expect = 3.000e-55
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG VKTDW    F
Sbjct:  197 RGGLVKTDWSKAPF 210          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.357e-55
Identity = 99/198 (50.00%), Postives = 138/198 (69.70%), Query Frame = 3
Query:   87 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            +V  S+I SL + +    +VSS  F+  +  +W+  HV    DG +  L LD  SGA F+S   +LFG++ ++IKL+ G S GTV A+YMSSD PN +E DFEFLGN  G+PY++QTNVY  G+ NRE+R+ LWFDP K+FHTYS+LWN  Q+VF+VD+ PIR++ N   KG+ +P+ Q M V +S+WN + WAT+GG
Sbjct:   13 LVGFSIISSLLLWVSQASVVSSGDFNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGG 210          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 6.648e-55
Identity = 100/195 (51.28%), Postives = 139/195 (71.28%), Query Frame = 3
Query:   96 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            ++ +  LF+ L++   VS A F    + +W      ++ +G+ L L+LD  SG+GF SK++YLFGKVS+Q+KLV G+SAGTVT  Y+ S G   +E DFEFLGN++GEPY + TNVY  G G++EQ+  LWFDPT  FHTY++LWN ++++F VD TPIR   N+E  G  FPK++ M +YSS+WNADDWAT+GG
Sbjct:    3 ITYLLPLFLSLIITSSVS-ANFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNADDWATRGG 196          

HSP 2 Score: 23.8682 bits (50), Expect = 6.648e-55
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG VKTDW    F
Sbjct:  194 RGGLVKTDWSKAPF 207          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 8.663e-55
Identity = 103/205 (50.24%), Postives = 135/205 (65.85%), Query Frame = 3
Query:   87 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSD---GPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIP----FPKDQAMGVYSSIWNADDWATQGG 674
            M  + L  +  +    +    +  F+D +   W+ NH     DG+   L+LDN +G GF +K  Y FG  S+++KLVGGDSAG VTA+YM S+   GP  +E DFEFLGN TG+PY++QTNVY NG GNRE R  LWFDPTK++HTYS+LWN  Q+VF VD  PIRV+ N +   +P    FP  + M ++SSIWNADDWAT+GG
Sbjct:    1 MTALFLFMTALMASSSIAATPTQSFEDNFNIMWSENHFTTSDDGEIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDK--VPNNDFFPNQKPMYLFSSIWNADDWATRGG 203          

HSP 2 Score: 23.483 bits (49), Expect = 8.663e-55
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG  KTDWK   F
Sbjct:  201 RGGLEKTDWKKAPF 214          
The following BLAST results are available for this feature:
BLAST of FC924920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH_TOBAC3.587e-5753.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH25_ARATH3.596e-5652.04Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH7.967e-5652.11Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH1.039e-5552.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC1.968e-5557.65Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH2.571e-5551.81Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH23_ARATH3.000e-5551.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH3.357e-5550.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH6.648e-5551.28Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH8_ARATH8.663e-5550.24Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM03FM1 TF Citrus clementina cDNA clone KN0AAP1YM03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924920 ID=FC924920; Name=FC924920; organism=Citrus clementina; type=EST; length=712bp
AGAAGCTTCAACTTCCCTCCACTTCACTGGGCCTGCTCTGCTCATTCGCT
TACTTCCTCTCCCCGTTCTTCTGTCTTCATTCTTCAATGGTTAAAATGTC
TTTGATTTTCAGTCTGTTTGTGGGTCTTTTAATGGTAGGTTTGGTCAGCT
CAGCTAAGTTTGATGACCTTTATCAAACAAGCTGGGCATTTAATCATGTT
CAGTATGATGGGGACACTCTCAAGCTTAACCTCGATAATTATTCCGGAGC
TGGGTTTGCGTCAAAGAGCAAGTATTTGTTTGGGAAAGTCTCCATCCAAA
TTAAACTTGTAGGGGGTGACTCTGCTGGAACTGTCACTGCCTTCTATATG
TCATCAGACGGTCCAAATCACAACGAGTTCGATTTTGAGTTCCTGGGGAA
CACTACAGGAGAGCCATACTTAGTCCAAACCAATGTTTATGTGAATGGTG
TGGGCAACAGAGAGCAGAGACTTGACCTCTGGTTCGACCCAACAAAGGAA
TTTCATACCTATTCCCTCCTTTGGAACCAGCGCCAAGTTGTATTTTTGGT
GGATGAGACCCCAATTAGAGTGCACACTAACTTGGAGCACAAAGGAATTC
CCTTCCCAAAGGACCAAGCCATGGGTGTGTACAGTTCAATATGGAATGCT
GATGACTGGGCCACACAGGGGGGGAAAGGTCAAGACAGACTGGAAGCCTT
GCACCTTTTGTT
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